LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_221.5wLII_11185_11
Total number of 3D structures: 90
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1qpz_A
339
223
208
1.65
17.31
86.838
11.889
T P
1jft_A
340
223
208
1.66
17.79
86.771
11.843
T P
1jh9_A
339
223
207
1.70
17.39
86.628
11.511
T P
1jfs_A
339
223
208
1.69
17.79
86.331
11.632
T P
2puc_A
338
223
207
1.66
17.39
86.309
11.767
T P
1bdh_A
338
223
207
1.65
17.39
86.130
11.859
T P
1vpw_A
338
223
207
1.67
17.39
86.014
11.682
T P
2pue_A
338
223
207
1.69
17.39
85.878
11.553
T P
1zvv_A
332
223
202
2.02
11.88
77.032
9.526
T P
1rzr_G
332
223
188
2.01
10.11
72.609
8.910
T P
1rzr_D
332
223
194
2.14
10.82
71.694
8.649
T P
2pe5_B
330
223
193
2.40
13.47
64.798
7.722
T P
2nzu_G
275
223
153
1.63
8.50
63.142
8.841
T P
1efa_B
330
223
196
2.34
12.76
63.133
8.046
T P
2fep_A
273
223
151
1.70
6.62
62.275
8.380
T P
1sxh_A
273
223
150
1.69
9.33
61.919
8.384
T P
3egc_D
262
223
146
1.57
12.33
61.187
8.721
T P
2o20_B
275
223
153
1.94
9.80
61.076
7.486
T P
1jye_A
271
223
146
1.67
10.96
59.785
8.232
T P
2rgy_A
275
223
146
1.79
7.53
59.695
7.713
T P
3edc_A
300
223
145
1.74
11.72
59.218
7.898
T P
3c3k_B
272
223
143
1.75
9.09
59.096
7.723
T P
1jyf_A
272
223
146
1.82
11.64
58.835
7.589
T P
3ctp_A
266
223
141
1.51
9.93
58.792
8.751
T P
1lbi_A
296
223
146
1.78
11.64
58.713
7.769
T P
3bil_A
257
223
143
1.75
11.89
58.308
7.737
T P
2jcg_A
322
223
148
1.95
8.78
57.826
7.218
T P
3clk_B
262
223
139
1.81
9.35
56.306
7.265
T P
2hsg_A
328
223
146
2.09
8.90
52.782
6.670
T P
2iks_A
276
223
136
1.95
8.09
51.269
6.627
T P
3brq_B
277
223
139
2.03
10.07
48.762
6.539
T P
3e3m_A
270
223
142
2.15
4.93
48.368
6.303
T P
3dbi_A
278
223
144
2.42
7.64
43.334
5.707
T P
1jhz_A
276
223
121
2.19
9.92
41.870
5.279
T P
1dbq_A
276
223
119
2.15
10.08
41.529
5.298
T P
1l1m_A
62
223
56
1.59
19.64
23.824
3.308
T P
1cjg_A
62
223
54
1.56
22.22
23.240
3.249
T P
2bjc_A
62
223
54
1.60
20.37
22.838
3.168
T P
1lqc_A
56
223
46
1.93
21.74
18.693
2.262
T P
1pru_A
56
223
45
2.02
15.56
17.912
2.125
T P
2axz_A
306
223
57
2.51
10.53
17.081
2.182
T P
2axv_B
303
223
56
2.52
14.29
16.995
2.136
T P
2aw6_A
287
223
53
2.71
9.43
16.494
1.884
T P
2awi_A
298
223
58
2.80
6.90
16.088
1.999
T P
2axu_A
303
223
49
2.55
6.12
15.561
1.848
T P
2grm_A
315
223
54
2.78
12.96
15.496
1.873
T P
2ras_B
204
223
44
2.23
11.36
15.157
1.886
T P
2p5t_E
95
223
38
2.20
7.89
14.410
1.649
T P
2bnm_A
194
223
44
2.72
4.55
13.531
1.563
T P
2qfc_A
284
223
48
3.01
10.42
13.487
1.543
T P
2b5a_A
77
223
33
1.94
3.03
13.188
1.620
T P
1y7y_A
69
223
32
2.00
3.12
12.889
1.523
T P
3es1_A
163
223
43
2.81
4.65
12.757
1.477
T P
3f6w_A
82
223
33
2.37
12.12
12.206
1.335
T P
2ewt_A
71
223
32
2.15
0.00
12.137
1.423
T P
2ofy_A
82
223
31
2.05
3.23
12.091
1.443
T P
3bdn_A
234
223
41
2.49
7.32
12.054
1.585
T P
3eus_A
85
223
36
2.98
5.56
11.362
1.168
T P
1rio_A
97
223
38
2.55
5.26
11.239
1.433
T P
2iuo_A
156
223
36
2.48
2.78
11.071
1.395
T P
2eby_A
102
223
35
2.48
5.71
10.976
1.357
T P
1y9q_A
178
223
37
2.63
10.81
10.880
1.354
T P
1lli_B
92
223
39
2.81
7.69
10.750
1.338
T P
1lmb_4
92
223
36
2.75
2.78
10.735
1.263
T P
3cec_A
91
223
33
2.74
6.06
10.511
1.161
T P
2ivb_A
156
223
30
2.41
10.00
10.488
1.195
T P
1x57_A
91
223
35
2.91
5.71
10.424
1.165
T P
2jvl_A
107
223
35
2.55
14.29
10.361
1.323
T P
1b0n_A
103
223
35
2.76
8.57
10.029
1.224
T P
2ivg_A
156
223
33
2.46
6.06
9.997
1.290
T P
2k9q_A
77
223
36
2.67
2.78
9.966
1.301
T P
2iu7_A
156
223
29
2.58
6.90
9.937
1.081
T P
3b7h_A
76
223
32
2.61
15.62
9.831
1.181
T P
2ivq_A
156
223
28
2.56
7.14
9.764
1.054
T P
3dnv_B
71
223
34
2.87
11.76
9.634
1.145
T P
1r63_A
63
223
31
2.78
0.00
9.559
1.076
T P
1adr_A
76
223
33
2.92
0.00
9.372
1.092
T P
1dw9_A
156
223
30
2.81
3.33
9.243
1.030
T P
3bs3_A
62
223
30
2.73
3.33
9.083
1.060
T P
2r63_A
63
223
28
2.60
7.14
9.024
1.038
T P
1r69_A
63
223
29
3.03
10.34
8.953
0.928
T P
2r1j_L
66
223
29
2.78
13.79
8.885
1.005
T P
1utx_A
66
223
29
2.82
6.90
8.869
0.993
T P
3clc_B
77
223
29
2.88
3.45
8.825
0.972
T P
2cro_A
65
223
29
2.84
3.45
8.737
0.988
T P
3f52_E
78
223
29
2.73
13.79
8.575
1.025
T P
2iv1_A
156
223
29
2.93
0.00
8.540
0.956
T P
2ppx_A
62
223
27
2.85
3.70
8.539
0.914
T P
2ef8_A
84
223
27
2.68
14.81
8.467
0.972
T P
1sq8_A
64
223
27
2.86
7.41
8.018
0.913
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]