LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_224.5wLII_11195_7
Total number of 3D structures: 23
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2awn_B
374
235
195
1.41
14.36
79.252
12.890
T P
1q1b_A
367
235
194
1.60
14.43
77.014
11.394
T P
2r6g_B
372
235
193
1.88
14.51
72.887
9.732
T P
1vci_A
353
235
174
2.03
13.22
60.438
8.178
T P
1b0u_A
258
235
181
2.06
15.47
58.384
8.388
T P
1oxx_K
352
235
180
2.14
16.67
58.358
8.028
T P
1oxs_C
352
235
180
2.14
16.11
58.111
8.025
T P
2it1_A
362
235
178
2.08
13.48
57.543
8.171
T P
1v43_A
353
235
177
2.05
14.69
57.333
8.219
T P
3d31_A
348
235
179
2.13
12.29
56.987
8.023
T P
2olj_A
242
235
180
2.15
12.78
56.877
7.999
T P
2yyz_A
358
235
174
2.10
13.79
56.768
7.918
T P
3dhw_C
343
235
179
2.24
10.61
55.359
7.656
T P
1z47_A
345
235
180
2.25
16.67
53.905
7.663
T P
2d62_A
375
235
173
2.30
11.56
52.447
7.213
T P
2onk_A
240
235
176
2.23
11.36
52.392
7.555
T P
3c41_J
242
235
173
2.24
12.14
52.327
7.378
T P
1f3o_A
232
235
161
2.15
11.18
50.565
7.143
T P
1l2t_B
232
235
161
2.07
13.04
50.406
7.408
T P
1g29_1
372
235
166
2.35
12.65
50.102
6.767
T P
3bz1_C
447
235
57
2.59
7.02
15.654
2.116
T P
3bz1_B
490
235
55
2.75
7.27
14.929
1.930
T P
1izl_B
427
235
40
2.30
2.50
12.396
1.667
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]