LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_231.5wLII_11195_32.FR_1_700
Total number of 3D structures: 48
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1w3b_A
388
430
375
0.72
17.87
86.330
45.505
T P
2fi7_A
223
430
187
1.90
11.23
38.485
9.371
T P
2vq2_A
220
430
196
1.96
14.80
38.294
9.509
T P
2ho1_A
222
430
186
2.07
13.44
36.652
8.579
T P
2gw1_A
487
430
191
2.07
9.42
34.892
8.805
T P
2q7f_A
194
430
173
2.07
12.14
33.917
7.989
T P
2pl2_A
194
430
168
2.08
19.64
32.676
7.715
T P
3cv0_A
300
430
148
1.61
13.51
32.354
8.662
T P
1xnf_B
262
430
170
2.06
12.94
31.941
7.888
T P
1hh8_A
192
430
147
1.63
14.29
31.724
8.518
T P
1e96_B
185
430
147
1.60
14.29
31.718
8.647
T P
2c0l_A
292
430
149
1.80
14.09
31.448
7.859
T P
1wm5_A
205
430
145
1.56
14.48
31.386
8.731
T P
3edt_B
258
430
163
2.07
18.40
31.010
7.498
T P
2fo7_A
136
430
136
1.00
18.38
30.669
12.334
T P
2vsy_A
547
430
164
2.00
17.68
30.494
7.796
T P
3cvq_A
289
430
149
2.00
14.77
30.193
7.083
T P
3ceq_B
269
430
158
2.10
18.99
29.784
7.196
T P
1fch_A
302
430
152
2.12
13.16
29.547
6.847
T P
1hz4_A
366
430
188
2.45
7.45
28.466
7.377
T P
2c2l_A
281
430
124
1.46
12.90
27.913
7.939
T P
1wao_1
471
430
134
1.86
11.19
27.724
6.833
T P
1ihg_A
364
430
124
1.62
11.29
27.233
7.211
T P
1p5q_A
283
430
121
1.35
13.22
27.116
8.337
T P
2j9q_A
300
430
155
2.17
12.90
27.079
6.824
T P
2vsn_A
534
430
154
2.34
13.64
26.964
6.299
T P
2c0m_C
302
430
147
2.31
12.93
26.566
6.093
T P
2vyi_A
128
430
119
1.23
13.45
26.536
8.937
T P
1na0_A
119
430
119
1.35
19.33
26.369
8.198
T P
1kt1_A
374
430
121
1.59
7.44
26.225
7.143
T P
1qz2_A
285
430
120
1.62
6.67
26.221
6.979
T P
2fbn_A
153
430
117
1.30
11.11
26.178
8.369
T P
2dba_A
148
430
122
1.60
10.66
26.080
7.164
T P
1elw_A
117
430
117
1.24
11.97
25.757
8.738
T P
2bug_A
131
430
121
1.73
11.57
25.432
6.630
T P
1a17_A
159
430
125
2.07
16.80
25.181
5.753
T P
1kt0_A
357
430
117
1.67
7.69
25.089
6.627
T P
1elr_A
128
430
117
1.75
11.97
24.831
6.324
T P
2if4_A
258
430
113
1.96
7.96
22.961
5.498
T P
1na3_A
86
430
85
1.34
15.29
18.709
5.896
T P
1ouv_A
265
430
120
2.62
8.33
18.485
4.418
T P
2avp_A
68
430
68
1.18
22.06
15.392
5.303
T P
3e33_A
323
430
104
2.68
2.88
15.330
3.748
T P
2r2l_A
315
430
99
2.66
4.04
15.140
3.589
T P
1o5m_A
315
430
97
2.60
2.06
14.899
3.593
T P
1o1t_A
315
430
101
2.69
1.98
14.601
3.618
T P
1qbq_A
312
430
95
2.73
5.26
14.456
3.357
T P
1xi4_A
1630
430
100
2.75
7.00
14.350
3.503
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]