LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_231.5wLII_11195_32.FR_1_700
Total number of 3D structures: 48
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
430 |
375 |
0.72 |
17.87 |
86.330 |
45.505 |
T P |
2fi7_A |
223 |
430 |
187 |
1.90 |
11.23 |
38.485 |
9.371 |
T P |
2vq2_A |
220 |
430 |
196 |
1.96 |
14.80 |
38.294 |
9.509 |
T P |
2ho1_A |
222 |
430 |
186 |
2.07 |
13.44 |
36.652 |
8.579 |
T P |
2gw1_A |
487 |
430 |
191 |
2.07 |
9.42 |
34.892 |
8.805 |
T P |
2q7f_A |
194 |
430 |
173 |
2.07 |
12.14 |
33.917 |
7.989 |
T P |
2pl2_A |
194 |
430 |
168 |
2.08 |
19.64 |
32.676 |
7.715 |
T P |
3cv0_A |
300 |
430 |
148 |
1.61 |
13.51 |
32.354 |
8.662 |
T P |
1xnf_B |
262 |
430 |
170 |
2.06 |
12.94 |
31.941 |
7.888 |
T P |
1hh8_A |
192 |
430 |
147 |
1.63 |
14.29 |
31.724 |
8.518 |
T P |
1e96_B |
185 |
430 |
147 |
1.60 |
14.29 |
31.718 |
8.647 |
T P |
2c0l_A |
292 |
430 |
149 |
1.80 |
14.09 |
31.448 |
7.859 |
T P |
1wm5_A |
205 |
430 |
145 |
1.56 |
14.48 |
31.386 |
8.731 |
T P |
3edt_B |
258 |
430 |
163 |
2.07 |
18.40 |
31.010 |
7.498 |
T P |
2fo7_A |
136 |
430 |
136 |
1.00 |
18.38 |
30.669 |
12.334 |
T P |
2vsy_A |
547 |
430 |
164 |
2.00 |
17.68 |
30.494 |
7.796 |
T P |
3cvq_A |
289 |
430 |
149 |
2.00 |
14.77 |
30.193 |
7.083 |
T P |
3ceq_B |
269 |
430 |
158 |
2.10 |
18.99 |
29.784 |
7.196 |
T P |
1fch_A |
302 |
430 |
152 |
2.12 |
13.16 |
29.547 |
6.847 |
T P |
1hz4_A |
366 |
430 |
188 |
2.45 |
7.45 |
28.466 |
7.377 |
T P |
2c2l_A |
281 |
430 |
124 |
1.46 |
12.90 |
27.913 |
7.939 |
T P |
1wao_1 |
471 |
430 |
134 |
1.86 |
11.19 |
27.724 |
6.833 |
T P |
1ihg_A |
364 |
430 |
124 |
1.62 |
11.29 |
27.233 |
7.211 |
T P |
1p5q_A |
283 |
430 |
121 |
1.35 |
13.22 |
27.116 |
8.337 |
T P |
2j9q_A |
300 |
430 |
155 |
2.17 |
12.90 |
27.079 |
6.824 |
T P |
2vsn_A |
534 |
430 |
154 |
2.34 |
13.64 |
26.964 |
6.299 |
T P |
2c0m_C |
302 |
430 |
147 |
2.31 |
12.93 |
26.566 |
6.093 |
T P |
2vyi_A |
128 |
430 |
119 |
1.23 |
13.45 |
26.536 |
8.937 |
T P |
1na0_A |
119 |
430 |
119 |
1.35 |
19.33 |
26.369 |
8.198 |
T P |
1kt1_A |
374 |
430 |
121 |
1.59 |
7.44 |
26.225 |
7.143 |
T P |
1qz2_A |
285 |
430 |
120 |
1.62 |
6.67 |
26.221 |
6.979 |
T P |
2fbn_A |
153 |
430 |
117 |
1.30 |
11.11 |
26.178 |
8.369 |
T P |
2dba_A |
148 |
430 |
122 |
1.60 |
10.66 |
26.080 |
7.164 |
T P |
1elw_A |
117 |
430 |
117 |
1.24 |
11.97 |
25.757 |
8.738 |
T P |
2bug_A |
131 |
430 |
121 |
1.73 |
11.57 |
25.432 |
6.630 |
T P |
1a17_A |
159 |
430 |
125 |
2.07 |
16.80 |
25.181 |
5.753 |
T P |
1kt0_A |
357 |
430 |
117 |
1.67 |
7.69 |
25.089 |
6.627 |
T P |
1elr_A |
128 |
430 |
117 |
1.75 |
11.97 |
24.831 |
6.324 |
T P |
2if4_A |
258 |
430 |
113 |
1.96 |
7.96 |
22.961 |
5.498 |
T P |
1na3_A |
86 |
430 |
85 |
1.34 |
15.29 |
18.709 |
5.896 |
T P |
1ouv_A |
265 |
430 |
120 |
2.62 |
8.33 |
18.485 |
4.418 |
T P |
2avp_A |
68 |
430 |
68 |
1.18 |
22.06 |
15.392 |
5.303 |
T P |
3e33_A |
323 |
430 |
104 |
2.68 |
2.88 |
15.330 |
3.748 |
T P |
2r2l_A |
315 |
430 |
99 |
2.66 |
4.04 |
15.140 |
3.589 |
T P |
1o5m_A |
315 |
430 |
97 |
2.60 |
2.06 |
14.899 |
3.593 |
T P |
1o1t_A |
315 |
430 |
101 |
2.69 |
1.98 |
14.601 |
3.618 |
T P |
1qbq_A |
312 |
430 |
95 |
2.73 |
5.26 |
14.456 |
3.357 |
T P |
1xi4_A |
1630 |
430 |
100 |
2.75 |
7.00 |
14.350 |
3.503 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]