LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_235.5wLII_11195_46
Total number of 3D structures: 48
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3e7m_B
421
196
172
1.17
16.28
85.171
13.546
T P
4nos_A
420
196
172
1.17
15.12
85.110
13.556
T P
1m8d_A
416
196
173
1.24
16.18
85.101
12.870
T P
1df1_A
420
196
173
1.26
16.18
84.976
12.716
T P
1jwk_A
413
196
171
1.17
15.79
84.741
13.413
T P
1jwj_A
412
196
172
1.25
15.70
84.638
12.736
T P
1dwv_A
420
196
171
1.14
16.37
84.392
13.771
T P
2bhj_A
414
196
173
1.36
16.18
84.325
11.815
T P
1qom_A
420
196
170
1.17
16.47
84.074
13.420
T P
3dwj_B
412
196
171
1.23
16.37
84.058
12.831
T P
3e7g_C
423
196
169
1.22
15.98
84.054
12.827
T P
2g6m_B
411
196
171
1.43
16.96
83.747
11.161
T P
1n2n_A
419
196
170
1.27
16.47
83.720
12.409
T P
1nsi_A
420
196
170
1.25
15.88
83.698
12.568
T P
1zzt_A
405
196
171
1.47
17.54
83.327
10.888
T P
2g6j_B
411
196
170
1.36
17.65
83.309
11.624
T P
3ej8_A
421
196
168
1.36
16.07
83.230
11.525
T P
1lzx_B
410
196
169
1.39
17.16
83.208
11.329
T P
1zzq_B
410
196
170
1.39
17.06
83.127
11.410
T P
1vag_A
420
196
170
1.35
17.06
83.096
11.722
T P
1om4_B
411
196
169
1.33
17.16
83.067
11.833
T P
1p6i_B
410
196
169
1.38
17.16
82.966
11.442
T P
1zzu_B
411
196
169
1.32
17.75
82.926
11.886
T P
1zzs_A
405
196
169
1.45
18.34
82.821
10.874
T P
1q2o_A
405
196
169
1.30
17.75
82.720
12.056
T P
3e7s_A
403
196
170
1.42
17.65
82.678
11.158
T P
1p6k_B
410
196
169
1.39
17.75
82.622
11.367
T P
3nos_A
400
196
171
1.47
18.71
82.590
10.870
T P
1d0c_A
416
196
168
1.38
18.45
82.514
11.384
T P
3e7s_B
409
196
170
1.40
17.65
82.438
11.360
T P
1p6m_A
404
196
169
1.38
17.75
82.338
11.402
T P
1m9m_A
400
196
170
1.43
18.82
82.308
11.116
T P
2g6o_A
416
196
169
1.40
17.75
82.282
11.285
T P
1i83_A
416
196
167
1.37
17.37
82.156
11.385
T P
2flq_A
359
196
169
1.37
17.75
81.921
11.530
T P
2an2_A
360
196
165
1.43
15.76
80.635
10.800
T P
1m7v_A
361
196
165
1.41
16.97
80.089
10.927
T P
1mjt_B
347
196
161
1.52
16.15
77.399
9.928
T P
1vpx_E
216
196
47
2.32
10.64
17.850
1.942
T P
2hfw_A
257
196
46
2.56
6.52
15.909
1.731
T P
1z97_A
263
196
43
2.48
0.00
15.779
1.668
T P
2hfy_A
259
196
43
2.46
2.33
14.776
1.681
T P
2gjg_A
247
196
39
2.48
12.82
14.314
1.511
T P
2hfx_A
259
196
39
2.46
0.00
14.261
1.523
T P
1z93_A
263
196
43
2.89
9.30
14.140
1.440
T P
2rde_B
225
196
39
2.78
2.56
13.733
1.355
T P
1ywu_A
125
196
38
2.58
2.63
12.912
1.415
T P
1yln_A
225
196
35
2.51
2.86
12.438
1.342
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]