LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_236.5wLII_11195_47
Total number of 3D structures: 109
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2z1q_B
549
131
121
1.48
18.18
87.003
7.636
T P
1ivh_A
387
131
120
1.60
17.50
84.090
7.065
T P
3b96_A
554
131
120
1.74
13.33
84.058
6.517
T P
2uxw_A
567
131
120
1.75
13.33
84.035
6.495
T P
2d29_A
386
131
120
1.61
13.33
83.933
6.998
T P
2vig_E
380
131
120
1.59
10.83
83.872
7.087
T P
2dvl_A
370
131
117
1.59
14.53
83.651
6.921
T P
1rx0_A
384
131
117
1.56
12.82
83.514
7.056
T P
2ix6_A
416
131
119
1.68
16.81
83.404
6.703
T P
1buc_A
383
131
120
1.72
12.50
83.270
6.579
T P
1jqi_A
384
131
118
1.68
10.17
83.055
6.645
T P
2a1t_C
388
131
118
1.79
14.41
83.052
6.248
T P
2jif_A
381
131
118
1.63
12.71
82.757
6.826
T P
2ix5_A
415
131
118
1.68
13.56
82.553
6.641
T P
1udy_A
385
131
118
1.71
11.86
82.500
6.524
T P
3mdd_A
385
131
118
1.74
11.86
82.466
6.408
T P
2r0n_A
390
131
119
1.84
14.29
82.396
6.126
T P
1egd_A
387
131
118
1.75
13.56
82.202
6.387
T P
2pg0_A
380
131
117
1.74
16.24
81.894
6.370
T P
2r0m_A
390
131
118
1.82
11.02
81.852
6.130
T P
1ege_A
387
131
117
1.75
13.68
81.679
6.324
T P
1siq_A
390
131
118
1.84
11.02
81.438
6.081
T P
1ukw_A
379
131
118
1.86
13.56
81.087
6.023
T P
2eba_A
380
131
116
1.81
13.79
80.046
6.076
T P
1r2j_A
353
131
115
1.83
14.78
79.731
5.946
T P
3d6b_C
377
131
116
1.83
12.93
79.647
6.014
T P
3eom_A
387
131
114
1.82
13.16
78.743
5.939
T P
2fon_B
656
131
112
1.88
10.71
75.153
5.660
T P
1w07_B
658
131
109
1.82
10.09
74.482
5.691
T P
2ddh_A
622
131
111
2.00
10.81
68.513
5.283
T P
2c0u_A
430
131
113
2.11
14.16
66.134
5.114
T P
2reh_A
430
131
113
2.02
13.27
65.768
5.326
T P
2zaf_A
430
131
111
2.03
12.61
65.517
5.203
T P
2c12_A
430
131
113
2.05
13.27
65.262
5.257
T P
3djl_A
538
131
110
2.24
10.91
62.556
4.702
T P
1ny5_B
385
131
43
2.30
13.95
23.545
1.791
T P
3f9i_B
229
131
47
2.68
8.51
23.004
1.690
T P
1w25_A
454
131
49
2.74
14.29
22.860
1.723
T P
2nm0_A
221
131
41
2.40
7.32
22.091
1.639
T P
2ayz_A
133
131
38
2.36
5.26
21.999
1.547
T P
2chy_A
128
131
40
2.58
17.50
21.912
1.491
T P
3enn_B
242
131
46
2.72
4.35
21.887
1.633
T P
1mih_A
128
131
41
2.58
12.20
21.832
1.529
T P
1uzl_A
231
131
43
2.62
0.00
21.609
1.579
T P
1d4z_A
128
131
40
2.46
17.50
21.512
1.565
T P
1uzm_A
227
131
41
2.50
4.88
21.493
1.578
T P
2pd6_D
242
131
43
2.72
2.33
21.438
1.524
T P
2a8m_B
313
131
44
2.84
2.27
21.300
1.496
T P
2ayx_A
254
131
43
2.69
0.00
21.113
1.541
T P
1ymu_A
125
131
37
2.80
10.81
20.959
1.275
T P
2che_A
128
131
40
2.51
15.00
20.899
1.531
T P
1jbe_A
126
131
39
2.49
12.82
20.805
1.505
T P
1q7b_A
243
131
41
2.72
7.32
20.717
1.456
T P
1uls_B
245
131
42
2.86
4.76
20.708
1.418
T P
1rwb_A
261
131
44
2.84
11.36
20.558
1.495
T P
1ipe_A
259
131
42
2.72
9.52
20.558
1.488
T P
1fmc_A
255
131
41
2.73
17.07
20.546
1.451
T P
3eqv_A
443
131
39
2.86
7.69
20.292
1.319
T P
2a8j_B
313
131
39
2.61
10.26
20.136
1.439
T P
2hq1_A
221
131
40
2.67
7.50
19.993
1.444
T P
2r25_B
133
131
34
2.24
8.82
19.821
1.452
T P
1kmi_Y
128
131
38
2.66
18.42
19.815
1.374
T P
3emk_A
241
131
38
2.33
7.89
19.693
1.563
T P
2ntn_A
218
131
38
2.71
7.89
19.664
1.351
T P
2a4k_A
237
131
38
2.69
13.16
19.621
1.362
T P
2uvd_A
246
131
39
2.56
7.69
19.604
1.469
T P
2gwr_A
225
131
36
2.43
0.00
19.385
1.423
T P
1ab6_A
125
131
37
2.65
2.70
19.368
1.347
T P
2c07_A
246
131
36
2.65
8.33
19.357
1.308
T P
1ab5_A
125
131
39
2.65
2.56
19.311
1.419
T P
1udr_A
126
131
38
2.57
13.16
19.287
1.422
T P
1mvo_A
121
131
38
2.63
10.53
19.161
1.394
T P
2ae2_A
259
131
36
2.55
5.56
19.120
1.361
T P
1q7c_A
243
131
38
2.57
10.53
19.106
1.423
T P
1kgs_A
219
131
38
2.84
2.63
19.074
1.293
T P
2dtx_A
255
131
34
2.59
5.88
19.061
1.266
T P
1o5i_A
234
131
39
2.76
12.82
19.001
1.363
T P
2j8e_A
128
131
37
2.73
8.11
18.981
1.305
T P
2fka_A
128
131
37
2.75
8.11
18.941
1.297
T P
2a8l_B
310
131
37
2.72
5.41
18.607
1.312
T P
2cf2_E
226
131
34
2.43
2.94
18.528
1.342
T P
2a9r_A
117
131
34
2.74
5.88
18.481
1.196
T P
1vl8_B
252
131
36
2.79
8.33
18.284
1.246
T P
2a9o_A
117
131
35
2.62
0.00
18.186
1.288
T P
1ymv_A
124
131
35
2.52
14.29
18.181
1.334
T P
2pnf_A
248
131
34
2.56
8.82
18.172
1.280
T P
2a8i_A
341
131
37
2.76
8.11
18.076
1.294
T P
1tmy_A
118
131
36
3.05
5.56
18.067
1.142
T P
2ph3_A
245
131
35
2.96
2.86
18.036
1.145
T P
1u0s_Y
118
131
34
2.40
2.94
17.371
1.361
T P
2zk7_B
246
131
35
2.69
0.00
17.248
1.255
T P
1edo_A
244
131
37
2.87
10.81
17.061
1.244
T P
1geg_E
256
131
33
2.85
3.03
17.055
1.120
T P
1ys7_B
226
131
33
2.80
3.03
16.737
1.139
T P
1gee_A
261
131
34
2.79
5.88
16.666
1.177
T P
1ev7_A
295
131
33
2.70
3.03
16.552
1.177
T P
1mb3_A
117
131
27
2.12
11.11
16.551
1.215
T P
1oxk_B
128
131
31
2.73
9.68
16.290
1.095
T P
2iyn_B
124
131
26
2.06
7.69
15.659
1.201
T P
1dcf_A
133
131
31
2.75
0.00
15.576
1.086
T P
3c97_A
120
131
28
2.61
10.71
15.474
1.033
T P
2eub_A
121
131
31
2.83
0.00
15.180
1.059
T P
2ekp_A
238
131
32
2.98
15.62
15.128
1.038
T P
1ae1_B
258
131
29
2.74
10.34
14.199
1.020
T P
3ftp_A
248
131
28
2.74
7.14
13.942
0.984
T P
2z1n_B
243
131
27
2.77
3.70
13.798
0.942
T P
2d1y_C
248
131
27
2.82
3.70
13.703
0.924
T P
3chy_A
128
131
27
2.72
7.41
13.309
0.957
T P
1cye_A
129
131
24
2.58
8.33
12.819
0.896
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]