LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_238.5wLII_11212_44
Total number of 3D structures: 44
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1w3b_A
388
397
341
2.00
13.20
74.225
16.249
T P
2vq2_A
220
397
183
2.03
9.84
38.282
8.580
T P
2gw1_A
487
397
190
2.07
14.21
36.899
8.743
T P
3edt_B
258
397
163
2.04
10.43
34.557
7.600
T P
2ho1_A
222
397
159
2.02
13.84
34.506
7.511
T P
3cv0_A
300
397
146
1.74
13.70
33.815
7.930
T P
1hh8_A
192
397
145
1.62
6.21
33.808
8.418
T P
1e96_B
185
397
146
1.74
6.85
33.780
7.943
T P
2fi7_A
223
397
165
2.16
13.33
33.619
7.287
T P
1wm5_A
205
397
142
1.54
6.34
33.554
8.658
T P
2pl2_A
194
397
160
2.12
13.75
33.542
7.194
T P
3cvq_A
289
397
143
1.69
9.79
33.150
8.000
T P
2c0l_A
292
397
147
1.86
6.80
33.047
7.506
T P
2j9q_A
300
397
144
1.80
7.64
32.973
7.594
T P
2fo7_A
136
397
133
1.13
20.30
32.074
10.852
T P
2vsy_A
547
397
145
1.89
11.03
31.834
7.273
T P
2q7f_A
194
397
151
1.98
15.89
31.742
7.254
T P
2c0m_C
302
397
143
1.88
7.69
31.464
7.220
T P
1xnf_B
262
397
160
2.11
13.12
31.413
7.228
T P
3ceq_B
269
397
162
2.17
14.20
31.285
7.125
T P
1fch_A
302
397
144
1.94
6.94
30.987
7.046
T P
2vsn_A
534
397
146
2.10
8.90
30.359
6.642
T P
1wao_1
471
397
129
1.68
9.30
29.941
7.258
T P
1p5q_A
283
397
117
1.50
10.26
28.280
7.308
T P
1kt1_A
374
397
117
1.46
10.26
28.204
7.494
T P
1qz2_A
285
397
117
1.48
11.11
28.076
7.402
T P
2bug_A
131
397
121
1.73
9.09
27.628
6.606
T P
2vyi_A
128
397
120
1.80
10.00
27.446
6.331
T P
1ihg_A
364
397
120
1.79
10.00
27.149
6.364
T P
1kt0_A
357
397
113
1.52
8.85
27.080
6.959
T P
1a17_A
159
397
120
1.83
10.00
27.042
6.231
T P
1na0_A
119
397
115
1.45
17.39
26.921
7.414
T P
2c2l_A
281
397
124
1.99
12.90
26.784
5.927
T P
2dba_A
148
397
121
1.94
11.57
26.619
5.934
T P
2fbn_A
153
397
115
1.85
10.43
26.454
5.898
T P
1elw_A
117
397
111
1.33
3.60
26.412
7.746
T P
1elr_A
128
397
113
1.72
8.85
26.160
6.201
T P
2if4_A
258
397
116
1.99
9.48
24.771
5.562
T P
1na3_A
86
397
85
1.36
17.65
20.312
5.820
T P
2ooe_A
528
397
112
2.47
12.50
19.621
4.358
T P
1ouv_A
265
397
128
2.76
6.25
18.885
4.481
T P
2avp_A
68
397
68
1.10
11.76
16.700
5.646
T P
1xi4_A
1630
397
90
2.86
7.78
14.237
3.041
T P
3c37_A
223
397
49
2.45
6.12
8.761
1.922
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]