LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_238.5wLII_11212_44
Total number of 3D structures: 44
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
397 |
341 |
2.00 |
13.20 |
74.225 |
16.249 |
T P |
2vq2_A |
220 |
397 |
183 |
2.03 |
9.84 |
38.282 |
8.580 |
T P |
2gw1_A |
487 |
397 |
190 |
2.07 |
14.21 |
36.899 |
8.743 |
T P |
3edt_B |
258 |
397 |
163 |
2.04 |
10.43 |
34.557 |
7.600 |
T P |
2ho1_A |
222 |
397 |
159 |
2.02 |
13.84 |
34.506 |
7.511 |
T P |
3cv0_A |
300 |
397 |
146 |
1.74 |
13.70 |
33.815 |
7.930 |
T P |
1hh8_A |
192 |
397 |
145 |
1.62 |
6.21 |
33.808 |
8.418 |
T P |
1e96_B |
185 |
397 |
146 |
1.74 |
6.85 |
33.780 |
7.943 |
T P |
2fi7_A |
223 |
397 |
165 |
2.16 |
13.33 |
33.619 |
7.287 |
T P |
1wm5_A |
205 |
397 |
142 |
1.54 |
6.34 |
33.554 |
8.658 |
T P |
2pl2_A |
194 |
397 |
160 |
2.12 |
13.75 |
33.542 |
7.194 |
T P |
3cvq_A |
289 |
397 |
143 |
1.69 |
9.79 |
33.150 |
8.000 |
T P |
2c0l_A |
292 |
397 |
147 |
1.86 |
6.80 |
33.047 |
7.506 |
T P |
2j9q_A |
300 |
397 |
144 |
1.80 |
7.64 |
32.973 |
7.594 |
T P |
2fo7_A |
136 |
397 |
133 |
1.13 |
20.30 |
32.074 |
10.852 |
T P |
2vsy_A |
547 |
397 |
145 |
1.89 |
11.03 |
31.834 |
7.273 |
T P |
2q7f_A |
194 |
397 |
151 |
1.98 |
15.89 |
31.742 |
7.254 |
T P |
2c0m_C |
302 |
397 |
143 |
1.88 |
7.69 |
31.464 |
7.220 |
T P |
1xnf_B |
262 |
397 |
160 |
2.11 |
13.12 |
31.413 |
7.228 |
T P |
3ceq_B |
269 |
397 |
162 |
2.17 |
14.20 |
31.285 |
7.125 |
T P |
1fch_A |
302 |
397 |
144 |
1.94 |
6.94 |
30.987 |
7.046 |
T P |
2vsn_A |
534 |
397 |
146 |
2.10 |
8.90 |
30.359 |
6.642 |
T P |
1wao_1 |
471 |
397 |
129 |
1.68 |
9.30 |
29.941 |
7.258 |
T P |
1p5q_A |
283 |
397 |
117 |
1.50 |
10.26 |
28.280 |
7.308 |
T P |
1kt1_A |
374 |
397 |
117 |
1.46 |
10.26 |
28.204 |
7.494 |
T P |
1qz2_A |
285 |
397 |
117 |
1.48 |
11.11 |
28.076 |
7.402 |
T P |
2bug_A |
131 |
397 |
121 |
1.73 |
9.09 |
27.628 |
6.606 |
T P |
2vyi_A |
128 |
397 |
120 |
1.80 |
10.00 |
27.446 |
6.331 |
T P |
1ihg_A |
364 |
397 |
120 |
1.79 |
10.00 |
27.149 |
6.364 |
T P |
1kt0_A |
357 |
397 |
113 |
1.52 |
8.85 |
27.080 |
6.959 |
T P |
1a17_A |
159 |
397 |
120 |
1.83 |
10.00 |
27.042 |
6.231 |
T P |
1na0_A |
119 |
397 |
115 |
1.45 |
17.39 |
26.921 |
7.414 |
T P |
2c2l_A |
281 |
397 |
124 |
1.99 |
12.90 |
26.784 |
5.927 |
T P |
2dba_A |
148 |
397 |
121 |
1.94 |
11.57 |
26.619 |
5.934 |
T P |
2fbn_A |
153 |
397 |
115 |
1.85 |
10.43 |
26.454 |
5.898 |
T P |
1elw_A |
117 |
397 |
111 |
1.33 |
3.60 |
26.412 |
7.746 |
T P |
1elr_A |
128 |
397 |
113 |
1.72 |
8.85 |
26.160 |
6.201 |
T P |
2if4_A |
258 |
397 |
116 |
1.99 |
9.48 |
24.771 |
5.562 |
T P |
1na3_A |
86 |
397 |
85 |
1.36 |
17.65 |
20.312 |
5.820 |
T P |
2ooe_A |
528 |
397 |
112 |
2.47 |
12.50 |
19.621 |
4.358 |
T P |
1ouv_A |
265 |
397 |
128 |
2.76 |
6.25 |
18.885 |
4.481 |
T P |
2avp_A |
68 |
397 |
68 |
1.10 |
11.76 |
16.700 |
5.646 |
T P |
1xi4_A |
1630 |
397 |
90 |
2.86 |
7.78 |
14.237 |
3.041 |
T P |
3c37_A |
223 |
397 |
49 |
2.45 |
6.12 |
8.761 |
1.922 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]