LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_245.5wLII_11212_69
Total number of 3D structures: 83
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1dts_A
220
202
192
0.45
25.00
94.674
34.924
T P
1byi_A
224
202
192
0.59
25.00
94.520
27.846
T P
2qmo_A
220
202
180
1.55
18.33
83.733
10.929
T P
1jpn_A
296
202
141
1.85
16.31
54.800
7.234
T P
2c03_B
297
202
142
1.90
16.20
54.762
7.118
T P
3e70_C
307
202
143
2.04
10.49
53.149
6.686
T P
2ffh_A
407
202
141
1.82
17.02
53.004
7.351
T P
2j45_A
297
202
140
1.88
16.43
52.930
7.053
T P
2ng1_A
293
202
140
1.88
16.43
52.210
7.086
T P
1ls1_A
289
202
140
1.89
16.43
52.146
7.042
T P
1ffh_A
287
202
140
1.88
16.43
51.589
7.055
T P
1fts_A
295
202
140
2.09
14.29
51.260
6.397
T P
1vcn_A
506
202
150
2.26
16.67
50.905
6.351
T P
3dm9_B
305
202
143
2.10
9.09
50.818
6.496
T P
1s1m_B
536
202
149
2.23
13.42
50.711
6.408
T P
1vco_A
531
202
147
2.23
17.69
50.387
6.301
T P
1vma_A
294
202
142
2.09
11.27
50.303
6.470
T P
1rj9_B
282
202
143
2.09
14.69
50.029
6.539
T P
2j7p_A
292
202
142
2.07
16.20
49.839
6.553
T P
2qy9_A
300
202
137
1.99
13.14
49.680
6.559
T P
2bek_A
244
202
136
2.11
18.38
49.627
6.155
T P
2v3c_C
403
202
135
2.16
12.59
49.400
5.980
T P
1wcv_1
243
202
134
2.04
16.42
49.290
6.268
T P
2q9c_A
304
202
138
2.10
16.67
48.991
6.275
T P
3dm5_A
416
202
137
2.01
13.14
48.834
6.490
T P
2og2_A
302
202
141
2.13
12.06
48.812
6.315
T P
3b9q_A
298
202
141
2.17
12.06
48.720
6.223
T P
3ea0_B
242
202
140
2.25
10.00
48.388
5.953
T P
1eg7_A
549
202
140
2.16
13.57
47.978
6.191
T P
1okk_D
265
202
138
2.16
16.67
47.716
6.107
T P
1cp2_A
269
202
141
2.22
10.64
47.693
6.078
T P
1ion_A
243
202
139
2.32
15.83
47.279
5.755
T P
1xd8_A
289
202
140
2.27
10.71
47.119
5.914
T P
1fpm_A
549
202
136
2.17
13.24
46.891
5.988
T P
2afh_E
289
202
140
2.29
12.14
46.802
5.861
T P
2ph1_A
247
202
138
2.24
17.39
46.718
5.887
T P
1g3q_A
237
202
133
2.20
15.04
46.712
5.774
T P
1hyq_A
232
202
132
2.16
14.39
46.697
5.830
T P
2j37_W
479
202
139
2.19
10.07
46.633
6.080
T P
1yrb_B
260
202
140
2.25
13.57
46.591
5.950
T P
1g20_H
262
202
139
2.29
12.23
46.421
5.813
T P
2c8v_A
271
202
139
2.33
10.07
46.199
5.722
T P
3end_A
268
202
137
2.33
9.49
46.007
5.633
T P
2vo1_A
235
202
130
2.14
15.38
46.006
5.816
T P
1xdb_A
289
202
137
2.28
10.22
45.791
5.767
T P
2j7p_D
265
202
138
2.26
16.67
45.754
5.858
T P
1zu4_A
305
202
132
2.13
11.36
45.692
5.906
T P
1qzx_A
425
202
133
2.19
9.02
45.547
5.812
T P
1rj9_A
277
202
136
2.28
16.18
45.176
5.721
T P
1ihu_A
540
202
129
2.19
17.83
45.043
5.642
T P
2iyl_D
271
202
132
2.22
16.67
44.724
5.686
T P
1rw4_A
271
202
132
2.28
10.61
44.681
5.539
T P
2ved_B
254
202
125
2.14
8.00
44.500
5.581
T P
2px0_A
258
202
134
2.24
11.94
44.388
5.724
T P
2c5m_C
252
202
128
2.23
14.84
44.374
5.499
T P
2oze_A
284
202
136
2.43
13.24
44.163
5.369
T P
3bfv_A
241
202
128
2.25
9.38
44.161
5.443
T P
2j28_9
430
202
132
2.26
9.85
44.115
5.590
T P
1j8m_F
295
202
136
2.44
8.82
44.113
5.357
T P
1de0_A
289
202
131
2.19
11.45
43.903
5.710
T P
3cio_A
255
202
123
2.19
15.45
43.522
5.372
T P
1j8y_F
291
202
128
2.17
8.59
43.422
5.627
T P
2p67_A
302
202
119
2.10
14.29
41.141
5.405
T P
2qm7_A
314
202
118
2.23
14.41
41.140
5.074
T P
2qm8_A
320
202
120
2.16
13.33
41.107
5.299
T P
3cwq_A
206
202
123
2.35
14.63
40.762
5.030
T P
1np6_B
169
202
105
1.98
11.43
37.013
5.042
T P
2yvu_A
179
202
97
2.27
13.40
32.909
4.098
T P
1b23_P
405
202
98
2.42
15.31
32.624
3.887
T P
2gc6_A
406
202
90
2.20
12.22
32.116
3.918
T P
2p5t_D
247
202
97
2.33
12.37
31.608
3.988
T P
1d2e_A
397
202
96
2.39
16.67
31.585
3.863
T P
2gc5_A
407
202
89
2.35
12.36
31.536
3.631
T P
1jbw_A
409
202
88
2.23
11.36
30.800
3.772
T P
3cr8_A
493
202
84
2.46
9.52
30.077
3.276
T P
2reb_A
303
202
87
2.57
14.94
29.557
3.254
T P
1u94_A
306
202
86
2.64
13.95
29.545
3.136
T P
2gks_B
529
202
82
2.28
10.98
29.234
3.450
T P
2gcb_A
407
202
79
2.13
13.92
29.211
3.538
T P
2dy1_A
660
202
89
2.50
6.74
28.746
3.417
T P
2f1r_A
148
202
88
2.46
12.50
28.520
3.433
T P
2fn8_A
292
202
70
2.85
4.29
22.413
2.375
T P
2fn9_A
280
202
66
2.75
10.61
22.082
2.317
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]