LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_248.5wLII_11212_72
Total number of 3D structures: 104
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1m53_A
556
256
213
0.99
23.00
80.863
19.547
T P
2pwf_C
556
256
213
1.20
19.25
79.679
16.349
T P
2pwe_A
556
256
213
1.20
19.72
79.622
16.364
T P
1zja_A
557
256
213
1.23
19.72
79.506
15.978
T P
2pwh_A
556
256
213
1.23
19.72
79.485
16.014
T P
1uok_A
558
256
205
1.51
12.68
74.979
12.756
T P
2zic_A
536
256
193
1.58
12.44
70.319
11.465
T P
2zid_A
536
256
193
1.57
12.44
70.223
11.570
T P
2ze0_A
531
256
187
1.88
12.83
63.827
9.443
T P
1g5a_A
628
256
170
2.13
8.24
50.949
7.633
T P
1wza_A
488
256
155
1.85
11.61
47.459
7.935
T P
1lwj_A
441
256
147
1.82
10.20
47.327
7.646
T P
1jgi_A
628
256
166
2.10
8.43
46.521
7.549
T P
1mvy_A
628
256
170
2.17
7.65
46.277
7.491
T P
3czl_A
612
256
155
2.10
9.68
44.678
7.048
T P
3czg_A
607
256
152
2.14
9.87
43.418
6.792
T P
1gvi_A
588
256
138
2.01
9.42
42.993
6.532
T P
1vfo_A
585
256
138
1.99
8.70
42.974
6.596
T P
1j0h_A
588
256
141
2.08
9.22
42.797
6.463
T P
1sma_A
588
256
140
2.04
9.29
42.399
6.546
T P
1ea9_C
583
256
140
2.07
11.43
41.992
6.466
T P
1g1y_A
585
256
132
1.96
10.61
41.117
6.421
T P
1jf5_A
585
256
135
2.01
10.37
41.002
6.410
T P
2d2o_A
585
256
134
2.08
9.70
40.967
6.137
T P
1j0j_A
588
256
136
2.03
9.56
40.896
6.390
T P
1wzl_A
585
256
131
1.95
10.69
40.732
6.391
T P
1ji2_A
585
256
133
2.00
10.53
40.384
6.328
T P
1wzk_A
585
256
133
2.01
10.53
40.345
6.300
T P
1wzm_A
585
256
132
1.93
11.36
40.320
6.513
T P
1jf6_A
585
256
134
1.98
10.45
40.230
6.443
T P
1eha_A
557
256
127
2.01
8.66
38.044
6.025
T P
1cgw_A
686
256
130
2.14
11.54
37.902
5.798
T P
1cxl_A
686
256
122
1.96
13.11
37.775
5.930
T P
1cyg_A
680
256
127
2.07
12.60
37.615
5.864
T P
1uks_A
686
256
124
2.08
12.10
37.265
5.682
T P
1eh9_A
557
256
127
2.05
10.24
37.205
5.897
T P
2vr5_A
715
256
128
2.10
11.72
36.761
5.823
T P
1m7x_B
591
256
129
2.19
8.53
33.861
5.638
T P
1mf7_A
194
256
75
2.41
2.67
19.611
2.989
T P
1mhp_B
192
256
66
2.22
3.03
19.510
2.839
T P
1jlm_A
187
256
74
2.36
2.70
19.486
3.006
T P
1shu_X
181
256
67
2.36
2.99
19.452
2.719
T P
2b2x_A
188
256
65
2.31
1.54
19.078
2.698
T P
1n3y_A
189
256
69
2.37
5.80
18.936
2.792
T P
1tzn_a
181
256
71
2.43
2.82
18.718
2.811
T P
1sht_X
177
256
64
2.36
3.12
18.265
2.606
T P
1m1u_A
184
256
68
2.44
4.41
18.101
2.674
T P
2is6_A
654
256
65
2.37
6.15
17.800
2.637
T P
1t6b_Y
170
256
68
2.50
1.47
17.576
2.619
T P
1ido_A
184
256
66
2.48
6.06
17.265
2.559
T P
2ok5_A
710
256
66
2.51
3.03
17.211
2.530
T P
1pt6_B
195
256
68
2.60
1.47
17.201
2.519
T P
1lsj_A
291
256
67
2.70
4.48
17.112
2.389
T P
1mjn_A
179
256
66
2.42
6.06
17.074
2.619
T P
1qhh_A
164
256
59
2.33
11.86
16.770
2.424
T P
1il0_A
291
256
62
2.49
11.29
16.670
2.390
T P
2odp_A
490
256
63
2.61
3.17
16.573
2.322
T P
1xuo_A
181
256
61
2.50
6.56
16.564
2.342
T P
1qc5_A
192
256
65
2.52
1.54
16.467
2.478
T P
1qcy_A
193
256
66
2.59
1.52
16.356
2.457
T P
2i6q_A
503
256
62
2.49
1.61
16.288
2.393
T P
1lso_A
291
256
64
2.60
9.38
16.005
2.371
T P
1ck4_B
194
256
63
2.59
1.59
15.976
2.344
T P
2orw_B
173
256
56
2.46
8.93
15.952
2.186
T P
1w36_B
1158
256
58
2.50
1.72
15.923
2.232
T P
3had_A
293
256
64
2.76
1.56
15.848
2.240
T P
1f0y_A
291
256
62
2.68
1.61
15.691
2.227
T P
2iue_A
212
256
62
2.78
0.00
15.641
2.152
T P
1qg8_A
238
256
61
2.46
6.56
15.624
2.381
T P
3hdh_A
291
256
61
2.76
3.28
15.587
2.135
T P
1pjr_A
623
256
60
2.66
8.33
15.579
2.173
T P
1m76_A
291
256
63
2.65
1.59
15.552
2.290
T P
1m75_A
291
256
60
2.62
1.67
15.405
2.209
T P
2adf_A
189
256
60
2.81
5.00
15.314
2.059
T P
2ica_A
179
256
56
2.41
12.50
15.173
2.231
T P
1atz_B
189
256
54
2.44
3.70
15.134
2.128
T P
3bqn_B
182
256
56
2.61
10.71
15.126
2.065
T P
1na5_A
195
256
60
2.68
11.67
15.082
2.159
T P
1qc5_B
190
256
58
2.74
5.17
15.055
2.045
T P
2hdh_A
293
256
62
2.75
4.84
15.011
2.176
T P
1bho_1
189
256
58
2.62
8.62
14.806
2.129
T P
1f17_A
293
256
57
2.76
3.51
14.791
1.995
T P
1ao3_A
187
256
52
2.50
5.77
14.786
2.004
T P
3ckj_A
300
256
57
2.76
5.26
14.777
1.991
T P
1rd4_A
184
256
57
2.84
12.28
14.613
1.938
T P
1lfa_A
183
256
60
2.81
6.67
14.528
2.059
T P
1uaa_A
636
256
56
2.69
3.57
14.495
2.009
T P
2ffu_A
494
256
60
2.79
6.67
14.306
2.076
T P
1n9z_A
184
256
53
2.61
11.32
14.214
1.954
T P
2pjr_F
544
256
57
2.75
8.77
14.151
2.002
T P
1fe8_C
191
256
56
2.63
5.36
14.127
2.054
T P
3e26_A
274
256
54
2.67
3.70
14.121
1.949
T P
1t0p_A
174
256
51
2.37
11.76
14.050
2.062
T P
2z87_A
601
256
54
2.71
3.70
13.826
1.920
T P
3bn3_A
180
256
51
2.65
15.69
13.749
1.853
T P
2z86_C
603
256
50
2.49
4.00
13.675
1.927
T P
2q7s_B
280
256
55
2.64
1.82
13.455
2.011
T P
3e2m_A
182
256
51
2.77
7.84
12.968
1.776
T P
1mq9_A
173
256
43
2.65
6.98
12.668
1.561
T P
1qhh_B
261
256
48
2.67
8.33
12.372
1.735
T P
2d7i_A
536
256
49
2.81
6.12
12.184
1.685
T P
1mq8_B
177
256
40
2.37
5.00
11.991
1.618
T P
3bcv_A
196
256
44
2.93
2.27
11.088
1.451
T P
1xhb_A
447
256
44
2.97
4.55
10.861
1.435
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]