LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_254.5wLII_11212_105
Total number of 3D structures: 121
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2ho3_D
304
176
156
1.15
19.87
85.928
12.508
T P
2ho5_A
305
176
153
1.25
20.92
83.635
11.319
T P
3e18_A
348
176
149
1.97
4.03
69.713
7.205
T P
3evn_A
316
176
152
1.98
9.87
68.290
7.323
T P
2glx_A
332
176
151
1.83
4.64
66.654
7.811
T P
1ydw_B
350
176
148
1.89
9.46
65.568
7.427
T P
3e9m_A
321
176
154
2.08
8.44
65.188
7.074
T P
1ofg_A
381
176
151
2.12
5.96
64.282
6.811
T P
2o4u_X
331
176
151
2.08
7.28
64.129
6.935
T P
1h6d_A
383
176
150
2.11
5.33
63.556
6.797
T P
1evj_A
340
176
151
2.15
5.30
62.615
6.712
T P
1ryd_A
381
176
149
2.11
5.37
62.563
6.757
T P
3c1a_A
307
176
142
2.00
6.34
61.792
6.751
T P
3dty_A
374
176
145
2.02
8.97
61.714
6.846
T P
3db2_A
347
176
140
1.98
9.29
60.165
6.745
T P
3e82_D
350
176
140
2.09
10.00
60.092
6.397
T P
1zh8_A
325
176
146
2.05
10.96
59.758
6.804
T P
3f4l_A
344
176
140
2.10
10.71
59.515
6.374
T P
3ezy_A
334
176
145
2.18
5.52
59.489
6.364
T P
3cea_A
342
176
139
1.99
5.76
59.379
6.657
T P
3fd8_D
349
176
144
2.29
9.03
58.561
6.036
T P
1tlt_B
305
176
142
2.30
9.15
58.077
5.929
T P
1gcu_A
292
176
139
2.12
7.91
57.258
6.249
T P
2h63_D
285
176
133
2.09
9.02
57.231
6.081
T P
3ec7_A
336
176
133
2.18
6.02
56.839
5.826
T P
1lc0_A
290
176
134
2.18
8.21
56.178
5.883
T P
3fhl_C
338
176
130
2.21
9.23
53.960
5.629
T P
2p2s_A
333
176
136
2.30
2.21
53.326
5.658
T P
2ixa_A
426
176
131
2.34
6.11
51.316
5.359
T P
3btu_A
392
176
138
2.51
6.52
50.639
5.278
T P
3euw_A
333
176
128
2.25
5.47
50.534
5.445
T P
1xea_A
311
176
113
2.13
5.31
50.394
5.068
T P
2nvw_A
413
176
135
2.41
5.19
50.215
5.387
T P
3btv_B
392
176
134
2.41
3.73
50.154
5.332
T P
3e1k_A
395
176
133
2.35
5.26
50.082
5.436
T P
1ff9_A
447
176
98
2.27
8.16
40.805
4.140
T P
2gb3_B
393
176
69
2.30
7.25
29.028
2.879
T P
1xi9_C
393
176
71
2.55
9.86
28.576
2.682
T P
1v2d_A
365
176
77
2.61
12.99
28.465
2.838
T P
1svv_B
342
176
58
1.98
5.17
26.822
2.786
T P
1o4s_B
384
176
65
2.34
9.23
26.702
2.668
T P
1i29_A
405
176
64
2.53
12.50
25.864
2.433
T P
1c0n_A
404
176
69
2.81
14.49
25.789
2.374
T P
1u08_A
382
176
67
2.69
7.46
25.416
2.401
T P
1j32_A
388
176
64
2.56
6.25
25.343
2.403
T P
3dyd_A
388
176
63
2.61
7.94
24.925
2.321
T P
3cai_A
396
176
65
2.62
12.31
24.845
2.387
T P
1jf9_A
405
176
66
2.67
13.64
24.746
2.383
T P
2hdy_A
403
176
66
2.80
10.61
24.619
2.275
T P
3dr4_C
368
176
60
2.36
10.00
24.465
2.436
T P
1bw0_B
412
176
67
2.72
2.99
24.394
2.377
T P
3b46_B
424
176
67
2.66
7.46
24.305
2.426
T P
2r5e_A
419
176
63
2.39
7.94
24.214
2.530
T P
1yiz_A
417
176
64
2.59
9.38
23.743
2.379
T P
1p3w_B
385
176
69
2.88
2.90
23.742
2.313
T P
3bn1_A
367
176
59
2.35
10.17
23.591
2.410
T P
2gms_A
390
176
59
2.67
8.47
23.531
2.131
T P
2zc0_A
405
176
66
2.66
10.61
23.184
2.394
T P
1qvr_A
803
176
62
2.51
11.29
23.171
2.373
T P
3fd0_A
407
176
54
2.25
7.41
22.838
2.297
T P
1kmj_A
405
176
57
2.65
12.28
22.680
2.070
T P
2o0r_A
384
176
59
2.44
15.25
22.443
2.326
T P
1n2t_A
385
176
60
2.55
5.00
21.881
2.263
T P
1y4i_A
396
176
61
2.88
8.20
21.869
2.048
T P
3b8x_B
388
176
58
2.58
12.07
21.856
2.167
T P
2fnu_B
374
176
58
2.61
18.97
21.634
2.138
T P
2rfv_A
390
176
59
2.88
6.78
21.510
1.983
T P
3dr7_A
367
176
55
2.71
9.09
21.489
1.955
T P
1eg5_B
365
176
59
2.82
8.47
21.272
2.023
T P
1ecx_B
365
176
55
2.86
7.27
21.207
1.859
T P
1elu_A
382
176
60
2.57
5.00
21.065
2.251
T P
2r0t_A
386
176
57
2.78
10.53
20.532
1.979
T P
1t3i_A
406
176
50
2.55
12.00
20.121
1.885
T P
2z61_A
368
176
48
2.61
2.08
18.186
1.774
T P
1fx7_A
230
176
45
2.70
4.44
17.681
1.607
T P
2fbi_A
136
176
41
2.40
7.32
16.868
1.642
T P
2z3y_A
643
176
43
2.59
4.65
16.817
1.596
T P
3cta_A
187
176
39
2.43
5.13
16.258
1.542
T P
2fxa_B
180
176
45
2.79
0.00
16.103
1.556
T P
3caz_B
210
176
42
2.44
4.76
16.074
1.655
T P
2h94_A
647
176
41
2.56
2.44
16.015
1.539
T P
3fm5_B
140
176
39
2.43
2.56
15.524
1.542
T P
3cjn_A
146
176
39
2.74
2.56
15.332
1.375
T P
3bpv_A
137
176
40
2.53
5.00
15.153
1.524
T P
3bro_B
140
176
38
2.66
5.26
15.115
1.377
T P
2fa5_B
142
176
39
2.79
7.69
15.052
1.348
T P
3deu_A
132
176
39
2.66
5.13
15.049
1.415
T P
3bj6_A
152
176
38
2.96
5.26
14.884
1.240
T P
2dw4_A
634
176
40
2.65
0.00
14.849
1.454
T P
2fbh_A
137
176
38
2.61
7.89
14.836
1.405
T P
3e6m_D
149
176
36
2.48
11.11
14.698
1.396
T P
3bja_A
139
176
39
2.93
10.26
14.674
1.287
T P
1z91_A
137
176
38
2.50
2.63
14.439
1.460
T P
2hko_A
647
176
37
2.73
8.11
14.243
1.307
T P
2isz_A
140
176
40
2.76
5.00
14.227
1.397
T P
3eco_A
135
176
38
2.77
2.63
14.089
1.323
T P
3boq_B
138
176
37
2.81
0.00
14.000
1.274
T P
2nnn_A
134
176
38
3.00
5.26
13.695
1.224
T P
2iw5_A
666
176
38
2.92
5.26
13.436
1.260
T P
2fbk_A
156
176
35
2.89
8.57
13.224
1.170
T P
2bv6_A
137
176
33
2.78
15.15
13.214
1.145
T P
2hr3_D
140
176
33
2.45
9.09
13.209
1.295
T P
2eth_A
141
176
34
2.85
0.00
13.172
1.151
T P
1s3j_A
143
176
34
2.61
8.82
13.091
1.252
T P
1lnw_A
141
176
31
2.63
6.45
12.928
1.134
T P
2a61_A
142
176
32
2.47
9.38
12.887
1.246
T P
2pex_B
137
176
33
2.72
15.15
12.823
1.170
T P
1jgs_A
138
176
35
2.64
5.71
12.815
1.276
T P
2rdp_A
140
176
35
2.85
0.00
12.801
1.187
T P
3ech_B
135
176
31
2.66
3.23
12.697
1.122
T P
1lj9_A
144
176
32
2.88
9.38
12.297
1.074
T P
2pfb_A
129
176
31
2.88
19.35
12.078
1.042
T P
1p4x_A
250
176
29
2.88
3.45
11.948
0.973
T P
1f5n_A
570
176
32
2.92
6.25
11.800
1.060
T P
3cdh_B
136
176
34
2.71
14.71
11.774
1.211
T P
2v1d_A
666
176
29
2.51
0.00
11.773
1.110
T P
3bpx_A
147
176
30
2.79
6.67
11.684
1.037
T P
3bdd_A
140
176
28
2.43
10.71
11.503
1.109
T P
2qww_A
146
176
29
2.81
3.45
11.436
0.995
T P
2gxg_A
140
176
28
2.69
7.14
11.322
1.005
T P
2nyx_B
147
176
23
2.76
4.35
9.765
0.804
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]