LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_258.5wLII_11212_125
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1oq4_A
346
286
279
0.80
17.56
96.556
31.115
T P
2j2f_A
348
286
280
0.89
17.14
96.198
28.240
T P
1afr_A
345
286
278
0.84
17.27
95.944
29.534
T P
2uw1_B
338
286
277
1.07
16.61
94.786
23.607
T P
2uw1_A
327
286
277
1.02
16.61
94.709
24.655
T P
1za0_A
242
286
194
1.62
19.07
63.610
11.303
T P
2av8_A
340
286
181
2.28
12.15
44.874
7.604
T P
1yfd_B
341
286
178
2.28
13.48
44.594
7.476
T P
1pj0_A
340
286
182
2.33
12.64
43.768
7.492
T P
1piy_A
340
286
182
2.35
10.99
43.571
7.425
T P
1piz_A
340
286
181
2.34
11.60
43.058
7.406
T P
2oc5_A
222
286
160
2.23
12.50
42.599
6.863
T P
1pm2_A
339
286
180
2.31
11.67
42.506
7.475
T P
1pfr_A
340
286
181
2.33
13.26
42.441
7.437
T P
1mxr_A
339
286
180
2.30
11.11
42.391
7.485
T P
1t0q_A
491
286
188
2.44
11.17
42.375
7.394
T P
1rib_A
340
286
179
2.35
11.73
42.265
7.295
T P
1biq_A
339
286
181
2.33
11.05
42.210
7.460
T P
2ani_A
317
286
187
2.42
12.83
42.188
7.409
T P
3dhi_A
498
286
177
2.35
12.43
42.170
7.219
T P
1av8_A
340
286
180
2.41
11.11
42.059
7.158
T P
1rnr_A
339
286
182
2.39
11.54
41.859
7.307
T P
2rdb_A
491
286
182
2.36
10.99
41.837
7.405
T P
1biq_B
341
286
172
2.32
9.88
41.794
7.112
T P
1uzr_B
288
286
180
2.55
11.67
41.792
6.797
T P
2alx_A
339
286
175
2.32
9.71
41.249
7.233
T P
1syy_A
317
286
181
2.46
12.71
40.835
7.060
T P
2inc_A
491
286
179
2.42
12.29
40.746
7.093
T P
1rsr_B
341
286
172
2.38
11.63
40.677
6.930
T P
2rcc_A
313
286
169
2.34
13.02
40.637
6.931
T P
1h0o_A
288
286
177
2.38
11.30
40.443
7.125
T P
1r2f_A
283
286
174
2.54
11.49
40.387
6.585
T P
2iyh_A
275
286
174
2.45
11.49
40.282
6.823
T P
3dhz_B
296
286
170
2.43
9.41
40.093
6.725
T P
2uw2_A
275
286
170
2.40
12.94
39.589
6.798
T P
1jk0_A
334
286
173
2.45
8.67
39.353
6.783
T P
2o1z_A
288
286
165
2.38
13.94
38.991
6.643
T P
1smq_A
329
286
163
2.38
9.20
38.422
6.561
T P
2p1i_A
258
286
166
2.45
13.25
38.270
6.499
T P
3fvb_A
161
286
131
2.03
18.32
37.907
6.151
T P
2vux_A
272
286
161
2.45
10.56
37.873
6.304
T P
3ez0_A
216
286
162
2.22
9.88
37.574
6.971
T P
1nfv_B
170
286
126
1.86
17.46
37.255
6.436
T P
1jk0_B
265
286
160
2.33
7.50
36.524
6.576
T P
2jcd_A
315
286
148
2.52
10.14
34.539
5.658
T P
2itb_A
199
286
129
2.24
15.50
33.183
5.506
T P
1eum_A
161
286
127
2.13
15.75
32.036
5.688
T P
2v8t_A
302
286
125
2.10
10.40
31.813
5.673
T P
2cwl_A
299
286
126
2.17
11.11
31.518
5.550
T P
1vlg_A
164
286
126
2.23
14.29
31.464
5.417
T P
2jd6_0
167
286
128
2.33
15.62
31.320
5.258
T P
1z4a_A
164
286
126
2.28
13.49
30.870
5.283
T P
3cht_A
301
286
126
2.46
11.11
29.612
4.928
T P
2oh3_A
149
286
112
2.40
12.50
27.862
4.482
T P
1j30_A
141
286
75
2.07
13.33
22.992
3.461
T P
3ezu_A
336
286
82
2.61
4.88
19.119
3.028
T P
1j0a_A
325
286
59
2.72
8.47
13.319
2.089
T P
2e0z_A
236
286
53
2.46
9.43
13.152
2.071
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]