LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_264.5wLII_11226_11
Total number of 3D structures: 79
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1qsa_A
618
185
166
0.46
15.66
89.654
29.604
T P
1sly_A
618
185
166
0.70
15.66
89.599
20.797
T P
1gbs_A
185
185
119
1.88
10.92
50.496
6.016
T P
153l_A
185
185
119
1.86
9.24
49.056
6.057
T P
1ltm_A
309
185
110
2.13
11.82
44.159
4.927
T P
1qus_A
312
185
109
2.19
11.93
43.065
4.759
T P
1flu_A
129
185
92
2.16
9.78
39.023
4.079
T P
1lsg_A
144
185
92
2.29
7.61
38.971
3.851
T P
1at5_A
127
185
90
2.19
10.00
38.633
3.931
T P
1iot_A
129
185
89
2.23
10.11
37.881
3.816
T P
1heq_A
129
185
89
2.14
10.11
37.708
3.981
T P
1gbx_A
130
185
91
2.19
7.69
37.214
3.971
T P
1di3_A
130
185
91
2.18
7.69
37.053
3.983
T P
2lhm_A
130
185
93
2.30
8.60
36.806
3.867
T P
1ir9_A
129
185
92
2.31
6.52
36.735
3.822
T P
1gfu_A
130
185
91
2.27
8.79
36.709
3.833
T P
1flw_A
129
185
92
2.31
7.61
36.702
3.812
T P
1ip2_A
130
185
91
2.28
7.69
36.666
3.824
T P
1ouh_A
130
185
92
2.30
7.61
36.621
3.826
T P
1lzd_A
129
185
93
2.40
7.53
36.580
3.720
T P
2vb1_A
129
185
91
2.30
7.69
36.579
3.796
T P
1flq_A
129
185
90
2.21
8.89
36.544
3.894
T P
1ioq_A
129
185
93
2.38
7.53
36.513
3.745
T P
1i20_A
130
185
90
2.29
7.78
36.484
3.773
T P
1gb6_A
130
185
90
2.33
7.78
36.414
3.709
T P
1ior_A
129
185
91
2.33
7.69
36.413
3.743
T P
1lhj_A
130
185
90
2.25
7.78
36.384
3.822
T P
1i22_A
130
185
92
2.27
6.52
36.370
3.876
T P
1gb7_A
130
185
92
2.37
8.70
36.367
3.729
T P
1nbz_C
129
185
91
2.27
9.89
36.332
3.836
T P
1gb9_A
130
185
91
2.34
7.69
36.330
3.725
T P
1yan_A
130
185
90
2.31
8.89
36.313
3.741
T P
1cj6_A
130
185
90
2.25
7.78
36.306
3.828
T P
1ge3_A
130
185
90
2.26
7.78
36.263
3.816
T P
1lsn_A
129
185
92
2.35
9.78
36.259
3.753
T P
1hhl_A
129
185
94
2.38
8.51
36.229
3.798
T P
2nwd_X
130
185
91
2.31
7.69
36.192
3.773
T P
1wqm_A
130
185
89
2.26
7.87
36.177
3.768
T P
1ios_A
129
185
91
2.33
7.69
36.165
3.743
T P
1fly_A
129
185
90
2.30
10.00
36.164
3.744
T P
1kxw_A
129
185
91
2.34
7.69
36.123
3.736
T P
2ihl_A
129
185
90
2.31
7.78
36.089
3.732
T P
1eqe_A
130
185
88
2.24
6.82
35.992
3.756
T P
1gft_A
130
185
91
2.33
5.49
35.971
3.747
T P
1lsm_A
129
185
90
2.32
8.89
35.947
3.725
T P
2iff_Y
129
185
89
2.33
7.87
35.906
3.668
T P
1at6_A
128
185
89
2.27
8.99
35.868
3.761
T P
1i1z_A
130
185
92
2.38
5.43
35.830
3.703
T P
1heo_A
129
185
90
2.32
7.78
35.809
3.727
T P
1lhl_A
130
185
93
2.39
5.38
35.781
3.741
T P
2meb_A
130
185
90
2.37
6.67
35.775
3.646
T P
1cj7_A
130
185
92
2.38
5.43
35.743
3.716
T P
1gaz_A
130
185
90
2.35
7.78
35.728
3.670
T P
1c46_A
131
185
87
2.25
5.75
35.669
3.698
T P
1ouf_A
130
185
87
2.26
5.75
35.624
3.693
T P
1gfh_A
130
185
89
2.31
7.87
35.611
3.699
T P
1gb5_A
130
185
90
2.37
5.56
35.541
3.650
T P
1ckd_A
130
185
87
2.26
5.75
35.537
3.689
T P
1lsy_A
129
185
88
2.23
9.09
35.420
3.777
T P
1gb8_A
130
185
90
2.38
6.67
35.416
3.627
T P
1ioc_A
133
185
87
2.19
4.60
35.388
3.800
T P
134l_A
130
185
86
2.31
5.81
35.289
3.573
T P
1tdy_A
130
185
84
2.19
5.95
35.223
3.668
T P
1c7p_A
133
185
86
2.21
4.65
35.162
3.720
T P
1ir7_A
129
185
86
2.20
9.30
35.145
3.732
T P
1ouc_A
130
185
90
2.42
5.56
35.049
3.578
T P
1hen_A
129
185
86
2.23
9.30
35.005
3.692
T P
1fbi_X
129
185
89
2.28
10.11
34.951
3.744
T P
1nby_C
129
185
88
2.30
11.36
34.932
3.668
T P
3b72_A
129
185
86
2.27
10.47
34.864
3.621
T P
1ndg_C
129
185
88
2.32
10.23
34.829
3.642
T P
1hem_A
129
185
85
2.22
9.41
34.752
3.662
T P
1hep_A
129
185
86
2.25
9.30
34.661
3.654
T P
1wqo_A
130
185
91
2.46
6.59
34.632
3.555
T P
1dkk_A
129
185
88
2.39
9.09
34.561
3.539
T P
2hea_A
130
185
85
2.20
7.06
34.292
3.692
T P
1her_A
129
185
86
2.26
10.47
34.281
3.648
T P
1hml_A
123
185
88
2.42
10.23
33.240
3.489
T P
2ra1_A
412
185
45
2.19
8.89
19.124
1.962
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]