LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_266.5wLII_11233_28
Total number of 3D structures: 78
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1l0q_A
391
320
291
1.02
16.49
88.273
26.028
T P
1ri6_A
333
320
267
1.78
9.74
75.167
14.188
T P
3fm0_A
328
320
243
1.71
9.05
70.312
13.400
T P
2gnq_A
316
320
245
1.72
6.53
70.218
13.448
T P
2h9l_A
321
320
246
1.67
10.16
70.134
13.937
T P
2h6n_B
305
320
245
1.72
6.94
70.119
13.444
T P
2g99_A
304
320
246
1.76
6.91
70.035
13.253
T P
2h9m_A
304
320
246
1.70
9.76
69.999
13.685
T P
2h14_A
303
320
245
1.69
10.20
69.868
13.694
T P
1vyh_C
310
320
246
1.77
9.76
69.853
13.159
T P
2cnx_A
306
320
246
1.76
6.10
69.778
13.198
T P
3frx_B
313
320
242
1.72
10.33
69.731
13.303
T P
2g9a_A
310
320
246
1.70
9.76
69.718
13.667
T P
1erj_C
357
320
246
1.78
8.94
69.705
13.052
T P
2co0_A
304
320
246
1.77
8.94
69.596
13.121
T P
3emh_A
300
320
245
1.71
9.80
69.560
13.505
T P
3bws_A
407
320
243
1.80
9.47
69.204
12.787
T P
1gxr_A
335
320
239
1.66
8.79
68.938
13.548
T P
3dm0_A
675
320
244
1.86
9.43
68.636
12.430
T P
2hes_X
308
320
239
1.74
8.37
68.085
12.969
T P
2bcj_B
339
320
246
1.91
9.76
67.883
12.223
T P
1p22_A
402
320
233
1.76
7.73
66.647
12.500
T P
3fgb_A
349
320
261
1.93
13.41
66.140
12.859
T P
2z2n_A
293
320
234
1.72
11.54
65.552
12.860
T P
1tbg_A
340
320
244
1.88
10.66
65.473
12.309
T P
2z2p_A
293
320
236
1.79
11.02
65.113
12.507
T P
2qc5_A
298
320
236
1.84
8.90
64.849
12.190
T P
2pbi_D
354
320
244
1.86
9.02
64.445
12.478
T P
2z2o_C
299
320
238
1.90
9.66
63.420
11.873
T P
3cfv_B
393
320
239
1.95
9.62
62.920
11.640
T P
1got_B
339
320
244
1.91
9.84
62.465
12.124
T P
3bg1_A
285
320
222
1.86
9.01
61.850
11.319
T P
2ece_A
455
320
255
1.96
9.80
60.610
12.379
T P
1a0r_B
339
320
241
2.02
11.20
59.953
11.344
T P
3c99_A
380
320
238
1.96
6.72
59.508
11.569
T P
1nr0_A
610
320
245
1.98
8.16
58.557
11.785
T P
3cfs_B
383
320
237
1.96
7.17
58.180
11.499
T P
2pm6_D
288
320
224
1.98
9.82
55.242
10.747
T P
2pm9_B
280
320
223
2.02
9.87
54.698
10.534
T P
2pm7_D
288
320
222
1.96
9.01
54.566
10.778
T P
1pi6_A
606
320
237
2.02
8.02
54.165
11.176
T P
2ovr_B
442
320
211
2.19
9.48
52.337
9.208
T P
3ei4_B
368
320
229
2.06
6.99
52.204
10.606
T P
1nex_B
444
320
214
2.24
10.28
51.985
9.144
T P
3ewe_A
255
320
207
1.91
10.63
49.436
10.307
T P
2b4e_A
386
320
218
2.26
8.26
48.478
9.231
T P
2aq5_A
395
320
218
2.30
8.26
47.060
9.072
T P
1q7f_B
282
320
186
2.18
9.68
44.343
8.158
T P
2dso_C
323
320
177
2.26
10.17
40.602
7.498
T P
1npe_A
263
320
189
2.31
11.11
40.499
7.831
T P
1r5m_A
351
320
193
2.32
8.29
40.314
7.969
T P
2zkq_a
306
320
202
2.54
11.39
39.935
7.648
T P
2fp8_B
303
320
182
2.32
10.99
39.784
7.534
T P
2dg0_A
322
320
175
2.17
10.29
39.240
7.716
T P
1rwi_A
256
320
173
2.29
8.67
39.104
7.236
T P
1ijq_A
308
320
186
2.26
6.99
39.062
7.885
T P
3dr2_A
299
320
175
2.30
10.29
38.692
7.294
T P
2iau_A
312
320
174
2.23
14.37
38.324
7.473
T P
2iav_A
312
320
175
2.25
14.86
37.851
7.444
T P
2ias_A
312
320
172
2.21
15.12
37.785
7.432
T P
2gvu_A
312
320
179
2.34
13.97
37.767
7.346
T P
2iao_A
312
320
185
2.36
13.51
37.677
7.532
T P
2iap_A
312
320
184
2.37
13.59
37.546
7.458
T P
2dg1_B
322
320
166
2.10
7.83
37.343
7.530
T P
2iax_A
312
320
184
2.36
12.50
37.242
7.475
T P
2iar_A
312
320
183
2.37
12.57
37.222
7.415
T P
2iaq_A
312
320
182
2.32
13.74
37.204
7.507
T P
2gvx_A
312
320
185
2.37
11.89
37.162
7.478
T P
2iat_A
312
320
182
2.33
13.74
37.148
7.493
T P
1pjx_A
314
320
183
2.33
13.66
37.125
7.530
T P
2iaw_A
312
320
175
2.30
13.71
36.885
7.297
T P
1n7d_A
639
320
187
2.45
8.02
36.628
7.321
T P
2qe8_A
337
320
174
2.31
12.64
36.561
7.206
T P
2ghs_A
295
320
170
2.42
11.18
35.645
6.744
T P
2ism_B
333
320
177
2.39
12.99
35.624
7.099
T P
2g8s_A
348
320
172
2.43
9.30
34.187
6.810
T P
3e5z_A
290
320
161
2.40
8.70
32.955
6.451
T P
1v04_A
332
320
151
2.32
14.57
31.034
6.236
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]