LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_267.5wLII_11233_31
Total number of 3D structures: 79
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1oq4_A
346
282
272
0.56
19.12
95.788
41.122
T P
1afr_A
345
282
272
0.63
19.12
95.684
37.057
T P
2j2f_A
348
282
272
0.63
19.12
95.659
37.009
T P
2uw1_B
338
282
272
0.69
16.91
95.539
34.225
T P
2uw1_A
327
282
272
0.74
16.91
95.438
32.387
T P
1za0_A
242
282
195
1.63
15.90
64.821
11.291
T P
1piy_A
340
282
179
2.17
12.29
46.049
7.886
T P
1rib_A
340
282
177
2.22
11.30
45.205
7.638
T P
1piz_A
340
282
184
2.28
11.41
44.831
7.736
T P
1pj0_A
340
282
178
2.24
11.80
44.320
7.615
T P
1mxr_A
339
282
181
2.28
10.50
43.659
7.596
T P
1pm2_A
339
282
180
2.27
11.67
43.556
7.602
T P
1rnr_A
339
282
180
2.31
11.11
43.483
7.461
T P
1pfr_A
340
282
179
2.25
12.29
43.476
7.602
T P
2av8_A
340
282
181
2.29
11.05
43.133
7.573
T P
1rsr_B
341
282
178
2.33
10.67
43.004
7.317
T P
1yfd_B
341
282
177
2.30
11.86
42.943
7.386
T P
1biq_A
339
282
178
2.26
10.67
42.847
7.554
T P
1av8_A
340
282
179
2.35
10.61
42.836
7.315
T P
2alx_A
339
282
177
2.35
10.73
42.828
7.221
T P
1biq_B
341
282
176
2.27
10.80
42.501
7.424
T P
2rcc_A
313
282
172
2.27
12.21
42.246
7.266
T P
1uzr_B
288
282
168
2.33
10.12
42.115
6.907
T P
2oc5_A
222
282
156
2.21
12.82
41.715
6.768
T P
2qqy_A
139
282
128
1.86
15.62
41.064
6.518
T P
3dhz_B
296
282
171
2.46
10.53
41.008
6.676
T P
2vux_A
272
282
169
2.32
12.43
40.854
6.997
T P
1h0o_A
288
282
172
2.39
11.05
40.745
6.920
T P
1syy_A
317
282
177
2.41
14.69
40.663
7.047
T P
2uw2_A
275
282
172
2.41
10.47
40.519
6.859
T P
1jk0_A
334
282
170
2.37
11.18
40.449
6.889
T P
2o1z_A
288
282
163
2.25
11.04
40.241
6.941
T P
2ani_A
317
282
172
2.44
14.53
39.912
6.769
T P
2iyh_A
275
282
170
2.46
9.41
39.728
6.630
T P
2inn_A
496
282
174
2.47
10.34
39.545
6.777
T P
1smq_A
329
282
161
2.40
11.18
39.416
6.448
T P
1r2f_A
283
282
163
2.37
12.88
39.332
6.596
T P
2p1i_A
258
282
162
2.31
11.73
39.305
6.717
T P
2rdb_A
491
282
170
2.44
9.41
39.207
6.684
T P
2inp_A
494
282
170
2.45
9.41
39.086
6.665
T P
2inc_A
491
282
173
2.56
9.83
38.934
6.503
T P
2fkz_A
155
282
129
1.93
15.50
38.783
6.355
T P
1sof_A
155
282
129
1.94
15.50
38.626
6.312
T P
2vxi_A
157
282
130
1.92
11.54
38.499
6.447
T P
3b3h_A
161
282
130
1.95
15.38
38.420
6.346
T P
1nfv_B
170
282
125
1.85
14.40
38.334
6.411
T P
1t0q_A
491
282
168
2.46
10.71
38.268
6.560
T P
3fvb_A
161
282
129
1.99
16.28
38.087
6.167
T P
1jgc_A
160
282
127
1.97
14.17
37.468
6.147
T P
1jk0_B
265
282
161
2.42
11.18
37.277
6.400
T P
3fse_B
349
282
134
2.22
11.19
36.508
5.779
T P
3ez0_A
216
282
155
2.29
10.32
36.417
6.492
T P
1yv1_A
202
282
119
1.91
10.08
35.874
5.929
T P
2clb_A
169
282
130
1.90
13.85
35.750
6.507
T P
2fzf_A
158
282
118
1.78
16.10
35.662
6.262
T P
1jkv_A
266
282
135
2.11
10.37
35.195
6.111
T P
1o9i_A
266
282
134
2.11
11.19
34.891
6.072
T P
1r03_A
171
282
130
2.15
14.62
34.703
5.772
T P
2jcd_A
315
282
148
2.55
8.11
34.619
5.581
T P
1lko_A
190
282
120
1.94
10.00
34.411
5.891
T P
1yuz_B
202
282
119
1.92
10.08
34.365
5.890
T P
1z6o_M
191
282
130
2.21
12.31
34.181
5.625
T P
1ryt_A
190
282
119
1.94
10.08
34.026
5.828
T P
2itb_A
199
282
128
2.17
17.97
33.815
5.634
T P
1vjx_A
149
282
112
1.88
12.50
32.856
5.652
T P
2cwl_A
299
282
129
2.08
13.18
32.801
5.929
T P
2v8t_A
302
282
128
2.09
13.28
32.640
5.843
T P
3cht_A
301
282
136
2.48
11.03
32.448
5.276
T P
1vlg_A
164
282
126
2.25
12.70
31.813
5.368
T P
1eum_A
161
282
124
2.10
12.10
31.691
5.638
T P
2jd6_0
167
282
127
2.33
13.39
31.033
5.221
T P
1z4a_A
164
282
121
2.24
12.40
30.734
5.164
T P
2oh3_A
149
282
110
2.31
14.55
28.933
4.569
T P
3ezu_A
336
282
85
2.06
11.76
23.491
3.944
T P
1zpy_D
92
282
64
1.56
10.94
21.868
3.853
T P
1j30_A
141
282
66
1.78
12.12
21.637
3.511
T P
1nnq_A
170
282
66
2.06
13.64
20.479
3.055
T P
1mft_A
51
282
51
1.34
13.73
17.368
3.544
T P
1i2a_A
212
282
53
2.73
7.55
11.794
1.874
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]