LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_268.5wLII_11233_37
Total number of 3D structures: 40
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2fo7_A |
136 |
152 |
136 |
0.70 |
21.32 |
88.446 |
17.008 |
T P |
1w3b_A |
388 |
152 |
142 |
1.33 |
17.61 |
88.386 |
9.949 |
T P |
2fi7_A |
223 |
152 |
140 |
1.69 |
12.14 |
84.767 |
7.830 |
T P |
2ho1_A |
222 |
152 |
138 |
1.72 |
11.59 |
84.329 |
7.598 |
T P |
2vq2_A |
220 |
152 |
139 |
1.72 |
12.23 |
83.250 |
7.622 |
T P |
1hh8_A |
192 |
152 |
135 |
1.50 |
14.81 |
82.710 |
8.424 |
T P |
2c0l_A |
292 |
152 |
130 |
1.31 |
13.85 |
82.277 |
9.216 |
T P |
1wm5_A |
205 |
152 |
133 |
1.55 |
15.79 |
82.199 |
8.078 |
T P |
2qfc_A |
284 |
152 |
134 |
1.76 |
14.93 |
82.046 |
7.220 |
T P |
1e96_B |
185 |
152 |
134 |
1.60 |
14.93 |
81.893 |
7.898 |
T P |
3cvq_A |
289 |
152 |
128 |
1.40 |
17.97 |
80.321 |
8.510 |
T P |
1fch_A |
302 |
152 |
129 |
1.47 |
13.18 |
80.229 |
8.242 |
T P |
3cv0_A |
300 |
152 |
129 |
1.58 |
17.05 |
80.061 |
7.664 |
T P |
2c0m_C |
302 |
152 |
127 |
1.64 |
14.17 |
78.431 |
7.316 |
T P |
2q7f_A |
194 |
152 |
131 |
1.89 |
20.61 |
77.787 |
6.585 |
T P |
3edt_B |
258 |
152 |
131 |
1.77 |
9.16 |
77.504 |
7.008 |
T P |
1xnf_B |
262 |
152 |
134 |
2.00 |
9.70 |
77.269 |
6.392 |
T P |
2pl2_A |
194 |
152 |
126 |
1.73 |
14.29 |
76.464 |
6.883 |
T P |
2j9q_A |
300 |
152 |
122 |
1.51 |
13.11 |
76.252 |
7.579 |
T P |
2c2l_A |
281 |
152 |
124 |
1.81 |
13.71 |
75.705 |
6.484 |
T P |
2gw1_A |
487 |
152 |
135 |
2.01 |
15.56 |
75.588 |
6.384 |
T P |
3ceq_B |
269 |
152 |
133 |
1.96 |
9.77 |
74.484 |
6.452 |
T P |
1qz2_A |
285 |
152 |
119 |
1.36 |
16.81 |
74.388 |
8.127 |
T P |
1ihg_A |
364 |
152 |
119 |
1.44 |
21.01 |
74.290 |
7.718 |
T P |
1p5q_A |
283 |
152 |
118 |
1.42 |
17.80 |
74.181 |
7.780 |
T P |
1kt1_A |
374 |
152 |
119 |
1.43 |
19.33 |
74.143 |
7.760 |
T P |
1a17_A |
159 |
152 |
119 |
1.40 |
11.76 |
73.823 |
7.921 |
T P |
2vyi_A |
128 |
152 |
119 |
1.49 |
13.45 |
72.671 |
7.495 |
T P |
1elr_A |
128 |
152 |
117 |
1.57 |
13.68 |
71.863 |
7.005 |
T P |
1wao_1 |
471 |
152 |
118 |
1.51 |
11.02 |
71.797 |
7.340 |
T P |
2bug_A |
131 |
152 |
119 |
1.72 |
10.92 |
70.654 |
6.538 |
T P |
1elw_A |
117 |
152 |
116 |
1.47 |
7.76 |
70.608 |
7.377 |
T P |
1na0_A |
119 |
152 |
117 |
1.70 |
17.09 |
70.516 |
6.495 |
T P |
1kt0_A |
357 |
152 |
114 |
1.59 |
21.05 |
70.484 |
6.733 |
T P |
2dba_A |
148 |
152 |
117 |
1.75 |
13.68 |
70.034 |
6.325 |
T P |
2fbn_A |
153 |
152 |
116 |
1.92 |
13.79 |
68.153 |
5.733 |
T P |
2if4_A |
258 |
152 |
102 |
1.59 |
16.67 |
63.447 |
6.043 |
T P |
1na3_A |
86 |
152 |
84 |
1.09 |
17.86 |
54.086 |
7.053 |
T P |
1ouv_A |
265 |
152 |
95 |
2.13 |
15.79 |
50.382 |
4.262 |
T P |
2avp_A |
68 |
152 |
68 |
0.59 |
17.65 |
44.581 |
9.908 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]