LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_270.5wLII_11233_42
Total number of 3D structures: 85
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2in3_A
204
207
199
0.53
18.59
95.625
31.689
T P
3bck_A
164
207
143
1.92
15.38
60.169
7.070
T P
1yzx_A
218
207
168
2.16
14.88
59.922
7.450
T P
1r4w_A
221
207
168
2.08
14.88
59.350
7.691
T P
3fz5_C
192
207
157
2.00
14.01
59.095
7.464
T P
3bci_A
165
207
142
1.89
15.49
58.526
7.138
T P
3bd2_A
164
207
140
1.89
15.71
58.317
7.050
T P
2imf_A
203
207
156
2.00
10.90
56.377
7.425
T P
2imd_A
203
207
156
2.03
10.90
56.169
7.318
T P
1u3a_E
188
207
137
1.98
8.76
52.468
6.573
T P
2b6m_B
188
207
141
2.05
9.22
52.088
6.551
T P
1fvj_A
188
207
141
2.08
8.51
51.845
6.477
T P
2rem_C
191
207
141
2.08
9.93
51.812
6.472
T P
1fvk_A
188
207
144
2.16
9.03
51.340
6.369
T P
1ac1_A
188
207
143
2.15
8.39
51.113
6.360
T P
1bq7_A
186
207
141
2.10
8.51
50.770
6.396
T P
1acv_A
188
207
142
2.18
8.45
50.720
6.224
T P
2b3s_A
187
207
139
2.12
9.35
50.218
6.271
T P
1bed_A
181
207
134
2.00
10.45
48.081
6.382
T P
3c7m_A
195
207
132
2.11
8.33
46.148
5.974
T P
2znm_C
186
207
131
2.22
9.92
43.813
5.656
T P
2ijy_A
181
207
129
2.30
7.75
43.145
5.365
T P
3feu_A
183
207
131
2.18
11.45
42.507
5.750
T P
1jzo_B
216
207
114
2.05
16.67
40.743
5.299
T P
1eej_A
216
207
113
2.04
16.81
40.443
5.285
T P
1jzd_A
219
207
112
2.11
16.96
38.802
5.057
T P
3dxb_D
216
207
87
1.68
13.79
38.395
4.882
T P
2trx_A
108
207
85
1.51
12.94
38.219
5.289
T P
3dyr_A
111
207
86
1.62
13.95
38.200
5.000
T P
1zzy_A
106
207
85
1.57
12.94
37.825
5.084
T P
2gzy_A
104
207
83
1.52
15.66
37.721
5.116
T P
1tho_A
109
207
85
1.61
12.94
37.679
4.958
T P
2tir_A
108
207
85
1.59
12.94
37.662
5.031
T P
2o8v_B
108
207
85
1.59
12.94
37.603
5.040
T P
1quw_A
105
207
85
1.64
14.12
37.571
4.892
T P
2fch_D
107
207
86
1.72
13.95
37.560
4.714
T P
1rqm_A
105
207
85
1.65
14.12
37.546
4.851
T P
2h76_A
108
207
85
1.61
12.94
37.452
4.977
T P
2h6z_A
108
207
85
1.61
12.94
37.448
4.958
T P
2eio_A
107
207
84
1.56
13.10
37.444
5.062
T P
2h74_A
108
207
85
1.65
12.94
37.427
4.857
T P
2cvk_A
105
207
85
1.72
17.65
37.399
4.667
T P
2h6y_A
107
207
85
1.66
12.94
37.315
4.835
T P
2eir_A
107
207
84
1.56
13.10
37.306
5.065
T P
2fd3_A
108
207
85
1.63
12.94
37.276
4.925
T P
2o7k_A
103
207
84
1.61
17.86
37.272
4.902
T P
2h70_A
107
207
85
1.71
12.94
37.228
4.693
T P
1nw2_A
105
207
85
1.82
15.29
37.192
4.425
T P
2h73_A
108
207
85
1.70
14.12
37.183
4.730
T P
1t00_A
112
207
82
1.57
15.85
37.171
4.912
T P
2o87_A
103
207
84
1.67
19.05
37.168
4.748
T P
2h71_A
107
207
85
1.68
12.94
37.154
4.772
T P
2o85_A
103
207
84
1.69
19.05
37.135
4.706
T P
1v98_A
92
207
86
1.79
22.09
37.118
4.538
T P
2eiq_A
107
207
84
1.62
13.10
37.111
4.883
T P
2o89_A
103
207
84
1.70
19.05
37.046
4.676
T P
1keb_A
108
207
85
1.73
12.94
37.039
4.646
T P
2yzu_A
104
207
84
1.70
16.67
37.003
4.676
T P
2h72_A
107
207
85
1.72
12.94
36.984
4.681
T P
1t3b_A
209
207
106
2.03
14.15
36.974
4.972
T P
1nsw_A
105
207
85
1.82
15.29
36.707
4.422
T P
2h75_B
108
207
84
1.73
14.29
36.552
4.585
T P
1f6m_C
108
207
85
1.78
14.12
36.543
4.511
T P
2j23_A
115
207
84
1.83
14.29
36.278
4.343
T P
1v58_A
229
207
106
2.27
16.04
36.109
4.476
T P
1z6m_A
175
207
116
2.45
9.48
35.900
4.555
T P
2i1u_A
108
207
82
1.80
13.41
35.762
4.321
T P
2h0i_A
229
207
107
2.27
16.82
35.467
4.513
T P
2h0g_A
229
207
106
2.24
16.98
35.458
4.524
T P
1x5d_A
133
207
83
1.99
16.87
34.833
3.974
T P
2dj2_A
120
207
80
1.86
16.25
34.784
4.077
T P
3f8u_A
469
207
81
1.98
11.11
34.409
3.895
T P
2h0h_B
230
207
104
2.36
18.27
34.373
4.233
T P
2dml_A
130
207
81
2.03
16.05
32.558
3.803
T P
1f9m_A
112
207
83
1.84
14.46
32.538
4.286
T P
1faa_A
121
207
83
1.86
14.46
32.485
4.240
T P
2pu9_C
111
207
83
1.90
13.25
32.282
4.155
T P
1kng_A
144
207
92
2.15
10.87
32.240
4.095
T P
1z5y_E
136
207
87
1.97
17.24
31.586
4.203
T P
2alb_A
113
207
76
2.16
13.16
31.263
3.364
T P
1srx_A
108
207
83
2.15
12.05
30.086
3.697
T P
1dyv_A
186
207
71
1.89
9.86
29.010
3.574
T P
1mek_A
120
207
79
2.27
10.13
25.836
3.331
T P
1fo5_A
85
207
62
2.53
14.52
19.587
2.356
T P
1nho_A
85
207
52
2.50
15.38
16.432
2.002
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]