LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_271.5wLII_11233_43
Total number of 3D structures: 41
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2fo7_A |
136 |
136 |
120 |
0.67 |
20.00 |
87.900 |
15.657 |
T P |
1w3b_A |
388 |
136 |
122 |
1.02 |
18.03 |
87.342 |
10.912 |
T P |
2vq2_A |
220 |
136 |
120 |
1.54 |
12.50 |
82.305 |
7.329 |
T P |
2c0l_A |
292 |
136 |
117 |
1.43 |
11.97 |
82.127 |
7.648 |
T P |
2fi7_A |
223 |
136 |
119 |
1.51 |
13.45 |
81.824 |
7.382 |
T P |
2ho1_A |
222 |
136 |
120 |
1.60 |
15.00 |
81.663 |
7.060 |
T P |
3cv0_A |
300 |
136 |
118 |
1.49 |
13.56 |
81.547 |
7.409 |
T P |
2pl2_A |
194 |
136 |
120 |
1.63 |
15.00 |
81.250 |
6.948 |
T P |
3cvq_A |
289 |
136 |
118 |
1.58 |
13.56 |
81.182 |
7.010 |
T P |
1e96_B |
185 |
136 |
117 |
1.68 |
9.40 |
80.144 |
6.568 |
T P |
2q7f_A |
194 |
136 |
118 |
1.73 |
16.95 |
79.918 |
6.434 |
T P |
1hh8_A |
192 |
136 |
116 |
1.64 |
9.48 |
79.776 |
6.661 |
T P |
1fch_A |
302 |
136 |
116 |
1.59 |
12.07 |
79.567 |
6.866 |
T P |
1wm5_A |
205 |
136 |
116 |
1.78 |
10.34 |
78.252 |
6.180 |
T P |
2c0m_C |
302 |
136 |
114 |
1.67 |
12.28 |
78.061 |
6.427 |
T P |
2gw1_A |
487 |
136 |
116 |
1.87 |
16.38 |
76.332 |
5.884 |
T P |
1xnf_B |
262 |
136 |
117 |
2.02 |
12.82 |
75.964 |
5.523 |
T P |
2j9q_A |
300 |
136 |
107 |
1.54 |
9.35 |
74.519 |
6.521 |
T P |
3edt_B |
258 |
136 |
112 |
1.85 |
8.04 |
73.272 |
5.737 |
T P |
2c2l_A |
281 |
136 |
106 |
1.69 |
16.04 |
72.822 |
5.919 |
T P |
2e2e_A |
171 |
136 |
108 |
1.97 |
8.33 |
72.437 |
5.229 |
T P |
1qz2_A |
285 |
136 |
102 |
1.22 |
15.69 |
72.262 |
7.717 |
T P |
1ihg_A |
364 |
136 |
102 |
1.20 |
16.67 |
72.049 |
7.844 |
T P |
2vyi_A |
128 |
136 |
101 |
1.15 |
16.83 |
71.875 |
8.084 |
T P |
1p5q_A |
283 |
136 |
102 |
1.25 |
16.67 |
71.843 |
7.571 |
T P |
1kt1_A |
374 |
136 |
102 |
1.22 |
15.69 |
71.811 |
7.725 |
T P |
1a17_A |
159 |
136 |
102 |
1.26 |
9.80 |
71.627 |
7.481 |
T P |
1na0_A |
119 |
136 |
101 |
1.20 |
21.78 |
71.623 |
7.760 |
T P |
2dba_A |
148 |
136 |
103 |
1.54 |
12.62 |
71.162 |
6.263 |
T P |
1wao_1 |
471 |
136 |
101 |
1.24 |
9.90 |
71.056 |
7.532 |
T P |
2bug_A |
131 |
136 |
102 |
1.45 |
10.78 |
70.030 |
6.586 |
T P |
1elw_A |
117 |
136 |
101 |
1.53 |
12.87 |
69.776 |
6.209 |
T P |
1elr_A |
128 |
136 |
102 |
1.53 |
14.71 |
69.543 |
6.252 |
T P |
3ceq_B |
269 |
136 |
108 |
1.90 |
15.74 |
69.313 |
5.390 |
T P |
2vsy_A |
547 |
136 |
114 |
2.14 |
14.91 |
69.211 |
5.081 |
T P |
1kt0_A |
357 |
136 |
97 |
1.22 |
14.43 |
68.557 |
7.356 |
T P |
2fbn_A |
153 |
136 |
101 |
1.59 |
12.87 |
68.457 |
5.983 |
T P |
2vsn_A |
534 |
136 |
109 |
2.07 |
14.68 |
66.922 |
5.031 |
T P |
2if4_A |
258 |
136 |
94 |
1.62 |
9.57 |
65.101 |
5.456 |
T P |
1na3_A |
86 |
136 |
81 |
1.02 |
24.69 |
58.733 |
7.244 |
T P |
2avp_A |
68 |
136 |
68 |
0.58 |
20.59 |
49.771 |
10.032 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]