LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_274.5wLII_11233_51
Total number of 3D structures: 44
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
3ceq_B |
269 |
179 |
179 |
0.81 |
15.64 |
98.794 |
19.670 |
T P |
3edt_B |
258 |
179 |
178 |
0.66 |
16.29 |
98.621 |
23.456 |
T P |
2j9q_A |
300 |
179 |
146 |
1.69 |
15.75 |
74.909 |
8.173 |
T P |
2c0m_C |
302 |
179 |
143 |
1.82 |
16.78 |
73.284 |
7.436 |
T P |
3cv0_A |
300 |
179 |
139 |
1.85 |
10.79 |
69.796 |
7.115 |
T P |
1e96_B |
185 |
179 |
130 |
1.66 |
14.62 |
67.007 |
7.399 |
T P |
3cvq_A |
289 |
179 |
137 |
2.02 |
11.68 |
66.811 |
6.470 |
T P |
1w3b_A |
388 |
179 |
131 |
1.76 |
16.03 |
66.753 |
7.043 |
T P |
1hh8_A |
192 |
179 |
130 |
1.72 |
14.62 |
66.699 |
7.155 |
T P |
1wm5_A |
205 |
179 |
129 |
1.75 |
14.73 |
65.936 |
6.956 |
T P |
2c0l_A |
292 |
179 |
135 |
1.99 |
17.04 |
65.275 |
6.461 |
T P |
1kt1_A |
374 |
179 |
126 |
1.77 |
16.67 |
64.838 |
6.725 |
T P |
1p5q_A |
283 |
179 |
128 |
1.81 |
14.06 |
64.774 |
6.717 |
T P |
1qz2_A |
285 |
179 |
129 |
1.88 |
13.95 |
64.510 |
6.524 |
T P |
2fo7_A |
136 |
179 |
123 |
1.68 |
21.14 |
63.926 |
6.895 |
T P |
1kt0_A |
357 |
179 |
122 |
1.70 |
17.21 |
62.849 |
6.789 |
T P |
2vq2_A |
220 |
179 |
126 |
1.92 |
10.32 |
62.032 |
6.228 |
T P |
1ihg_A |
364 |
179 |
128 |
1.79 |
11.72 |
61.495 |
6.773 |
T P |
2q7f_A |
194 |
179 |
128 |
2.03 |
17.97 |
60.378 |
6.016 |
T P |
2ifu_A |
275 |
179 |
121 |
1.86 |
10.74 |
60.358 |
6.185 |
T P |
1a17_A |
159 |
179 |
118 |
1.84 |
11.86 |
60.003 |
6.091 |
T P |
1wao_1 |
471 |
179 |
118 |
1.95 |
11.86 |
58.503 |
5.743 |
T P |
1fch_A |
302 |
179 |
127 |
2.17 |
15.75 |
58.482 |
5.591 |
T P |
1na0_A |
119 |
179 |
114 |
1.75 |
21.93 |
58.431 |
6.153 |
T P |
2fbn_A |
153 |
179 |
118 |
1.96 |
15.25 |
57.484 |
5.737 |
T P |
2fi7_A |
223 |
179 |
116 |
2.01 |
16.38 |
54.795 |
5.492 |
T P |
1elw_A |
117 |
179 |
109 |
1.86 |
12.84 |
54.616 |
5.551 |
T P |
2ho1_A |
222 |
179 |
117 |
2.06 |
16.24 |
54.523 |
5.418 |
T P |
2gw1_A |
487 |
179 |
123 |
2.21 |
12.20 |
54.430 |
5.332 |
T P |
2c2l_A |
281 |
179 |
113 |
2.10 |
17.70 |
53.894 |
5.147 |
T P |
1xnf_B |
262 |
179 |
120 |
2.38 |
13.33 |
53.892 |
4.846 |
T P |
2vyi_A |
128 |
179 |
106 |
1.95 |
15.09 |
53.192 |
5.178 |
T P |
2dba_A |
148 |
179 |
106 |
2.04 |
16.98 |
50.976 |
4.942 |
T P |
2vsy_A |
547 |
179 |
107 |
1.96 |
13.08 |
50.158 |
5.186 |
T P |
2vsn_A |
534 |
179 |
104 |
1.99 |
10.58 |
49.674 |
4.974 |
T P |
2bug_A |
131 |
179 |
106 |
2.16 |
9.43 |
49.236 |
4.699 |
T P |
1hz4_A |
366 |
179 |
117 |
2.30 |
11.11 |
49.110 |
4.884 |
T P |
1elr_A |
128 |
179 |
104 |
2.22 |
12.50 |
47.928 |
4.486 |
T P |
2pl2_A |
194 |
179 |
104 |
2.29 |
11.54 |
47.628 |
4.354 |
T P |
2if4_A |
258 |
179 |
104 |
2.00 |
12.50 |
46.973 |
4.944 |
T P |
1na3_A |
86 |
179 |
85 |
1.60 |
17.65 |
44.100 |
4.995 |
T P |
1ouv_A |
265 |
179 |
88 |
2.30 |
6.82 |
36.408 |
3.665 |
T P |
2avp_A |
68 |
179 |
67 |
1.28 |
19.40 |
36.021 |
4.870 |
T P |
1xi4_A |
1630 |
179 |
79 |
2.60 |
11.39 |
29.602 |
2.925 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]