LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_279.5wLII_11238_5
Total number of 3D structures: 62
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1mo9_A
522
119
90
2.05
21.11
60.984
4.190
T P
1f6m_A
320
119
93
2.22
7.53
57.452
4.007
T P
3cty_B
305
119
95
2.27
13.68
57.094
4.014
T P
2qae_A
465
119
92
2.16
9.78
56.348
4.074
T P
3cgb_A
444
119
85
2.16
14.12
55.634
3.763
T P
3lad_A
472
119
95
2.39
10.53
55.145
3.809
T P
2a8x_A
464
119
90
2.32
10.00
55.091
3.722
T P
1gte_D
1014
119
94
2.25
6.38
54.681
4.002
T P
3cgd_A
444
119
86
2.22
13.95
54.679
3.702
T P
1dxl_A
467
119
87
2.30
17.24
54.488
3.628
T P
1ger_B
449
119
86
2.21
10.47
54.412
3.718
T P
1h7x_B
1019
119
92
2.20
9.78
54.404
3.992
T P
1lpf_A
472
119
93
2.36
8.60
54.168
3.779
T P
2v6o_A
586
119
89
2.34
13.48
53.795
3.643
T P
1ges_B
449
119
84
2.16
10.71
53.558
3.709
T P
2r9z_B
453
119
87
2.39
16.09
52.824
3.497
T P
1grt_A
462
119
88
2.31
12.50
52.619
3.646
T P
1zmd_E
473
119
85
2.18
12.94
52.212
3.726
T P
1dnc_A
461
119
86
2.22
12.79
52.195
3.712
T P
3dk9_A
462
119
86
2.21
12.79
52.013
3.724
T P
3djg_X
461
119
87
2.26
12.64
51.981
3.684
T P
1zy8_A
474
119
85
2.23
16.47
51.730
3.648
T P
1xan_A
461
119
86
2.24
12.79
51.647
3.678
T P
1k4q_A
459
119
87
2.25
12.64
51.617
3.699
T P
1typ_A
487
119
87
2.20
12.64
51.504
3.789
T P
2yqu_A
455
119
81
2.12
17.28
51.361
3.648
T P
5grt_A
461
119
87
2.25
12.64
51.291
3.705
T P
1gsn_A
461
119
86
2.24
12.79
51.228
3.679
T P
2aaq_A
461
119
85
2.29
12.94
51.125
3.551
T P
2ve2_B
488
119
83
2.18
13.25
50.706
3.636
T P
3f8d_B
309
119
78
2.27
17.95
48.599
3.291
T P
3f8p_D
310
119
74
2.21
16.22
48.116
3.200
T P
1vdc_A
322
119
69
1.99
10.14
47.254
3.298
T P
2a87_A
313
119
72
2.12
11.11
46.616
3.241
T P
2zbw_B
334
119
68
2.21
10.29
44.453
2.948
T P
2q0l_A
311
119
64
2.20
14.06
43.569
2.779
T P
1gvi_A
588
119
48
2.68
6.25
25.403
1.726
T P
2fhf_A
1052
119
43
2.60
6.98
24.012
1.592
T P
1ji2_A
585
119
43
2.49
6.98
23.492
1.659
T P
1vfo_A
585
119
42
2.67
7.14
22.910
1.517
T P
1sma_A
588
119
40
2.61
7.50
21.846
1.478
T P
2d2o_A
585
119
37
2.55
10.81
21.819
1.394
T P
1izk_A
637
119
35
2.62
5.71
21.523
1.287
T P
1bf2_A
750
119
36
2.65
2.78
21.239
1.311
T P
2z1k_A
474
119
38
2.60
5.26
21.133
1.410
T P
2d0f_A
637
119
39
2.75
7.69
21.047
1.368
T P
1wzk_A
585
119
37
2.63
8.11
20.963
1.358
T P
1g1y_A
585
119
38
2.84
7.89
20.916
1.291
T P
1wzm_A
585
119
38
2.80
5.26
20.861
1.311
T P
1izj_A
637
119
36
2.68
13.89
20.776
1.296
T P
1j0h_A
588
119
37
2.58
8.11
20.752
1.382
T P
1uh4_A
637
119
36
2.83
5.56
20.662
1.227
T P
1ea9_C
583
119
36
2.76
5.56
20.524
1.258
T P
1jf6_A
585
119
38
2.74
7.89
20.493
1.340
T P
1ji1_A
637
119
38
2.67
5.26
20.238
1.374
T P
1wzl_A
585
119
38
2.70
2.63
20.143
1.357
T P
1jf5_A
585
119
37
2.99
5.41
20.012
1.196
T P
2e8y_A
712
119
38
2.97
7.89
19.926
1.239
T P
1j0j_A
588
119
32
2.80
3.12
18.650
1.104
T P
1eha_A
557
119
31
2.74
6.45
18.412
1.092
T P
1eh9_A
557
119
29
2.65
10.34
18.218
1.055
T P
2vr5_A
715
119
30
2.77
10.00
16.432
1.045
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]