LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_280.5wLII_11238_7
Total number of 3D structures: 88
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2b1k_A
149
129
121
0.77
20.66
92.551
13.884
T P
2g0f_A
149
129
121
0.80
19.83
92.472
13.379
T P
1kng_A
144
129
109
1.48
20.18
80.420
6.899
T P
1z5y_E
136
129
108
1.28
20.37
79.971
7.848
T P
1st9_A
137
129
109
1.84
17.43
76.462
5.612
T P
2ywi_A
190
129
111
1.89
14.41
76.041
5.586
T P
2f9s_A
138
129
109
1.92
15.60
75.894
5.405
T P
2h19_A
138
129
107
1.91
15.89
74.515
5.331
T P
1jfu_B
177
129
111
2.08
18.92
74.207
5.085
T P
3c73_B
138
129
108
1.96
15.74
74.176
5.255
T P
2h1a_B
139
129
108
1.99
15.74
74.137
5.171
T P
2h1g_B
137
129
107
1.92
14.95
73.958
5.293
T P
2h1b_A
138
129
107
1.98
15.89
73.275
5.145
T P
3fkf_A
141
129
106
1.94
16.98
72.791
5.187
T P
3c71_A
140
129
107
2.02
15.89
72.332
5.039
T P
1we0_A
166
129
103
1.85
12.62
71.785
5.285
T P
2hyx_A
333
129
106
1.87
20.75
70.358
5.378
T P
2trx_A
108
129
98
1.63
20.41
69.995
5.677
T P
3dyr_A
111
129
98
1.66
20.41
69.968
5.581
T P
2fd3_A
108
129
98
1.71
19.39
69.716
5.400
T P
2eio_A
107
129
97
1.58
20.62
69.682
5.776
T P
3dxb_D
216
129
97
1.61
20.62
69.417
5.658
T P
2eir_A
107
129
96
1.56
20.83
69.203
5.772
T P
2tir_A
108
129
97
1.68
20.62
69.189
5.459
T P
2h73_A
108
129
98
1.73
20.41
69.183
5.369
T P
1txx_A
108
129
96
1.63
19.79
69.183
5.561
T P
2o8v_B
108
129
96
1.61
19.79
69.169
5.601
T P
2fch_D
107
129
96
1.67
19.79
69.026
5.423
T P
1tho_A
109
129
98
1.73
19.39
68.979
5.360
T P
1zzy_A
106
129
96
1.67
20.83
68.965
5.439
T P
2h72_A
107
129
97
1.72
20.62
68.934
5.332
T P
1t00_A
112
129
97
1.75
19.59
68.921
5.248
T P
2h74_A
108
129
98
1.76
20.41
68.917
5.259
T P
2h75_B
108
129
97
1.69
21.65
68.904
5.422
T P
2h76_A
108
129
97
1.72
20.62
68.724
5.316
T P
2h71_A
107
129
98
1.78
19.39
68.625
5.221
T P
1keb_A
108
129
97
1.69
20.62
68.625
5.415
T P
2h70_A
107
129
97
1.75
20.62
68.567
5.239
T P
2h6y_A
107
129
97
1.76
20.62
68.537
5.217
T P
2h6z_A
108
129
97
1.76
20.62
68.441
5.216
T P
2i4a_A
107
129
96
1.77
17.71
68.231
5.126
T P
1nw2_A
105
129
94
1.51
17.02
68.003
5.832
T P
2cvk_A
105
129
95
1.73
22.11
67.819
5.182
T P
1zcp_A
106
129
93
1.58
19.35
67.625
5.527
T P
1nsw_A
105
129
95
1.59
17.89
67.391
5.631
T P
2o7k_A
103
129
93
1.68
18.28
67.200
5.237
T P
2yzu_A
104
129
96
1.81
22.92
67.180
5.022
T P
1f6m_C
108
129
97
1.88
19.59
67.166
4.887
T P
2b1l_B
129
129
92
1.71
19.57
67.037
5.077
T P
2o87_A
103
129
94
1.74
17.02
66.891
5.098
T P
2o85_A
103
129
94
1.76
17.02
66.864
5.048
T P
1xwb_A
106
129
93
1.74
13.98
66.816
5.041
T P
2voc_A
110
129
94
1.75
14.89
66.677
5.077
T P
1xwa_A
111
129
93
1.77
13.98
66.541
4.963
T P
1dby_A
107
129
95
1.88
15.79
66.525
4.787
T P
2gzy_A
104
129
93
1.73
18.28
66.306
5.074
T P
1x0r_A
244
129
108
2.07
13.89
66.248
4.988
T P
2eiq_A
107
129
90
1.53
22.22
65.626
5.511
T P
1srx_A
108
129
95
1.93
20.00
65.491
4.682
T P
1quw_A
105
129
96
1.97
15.62
65.342
4.646
T P
2cx4_A
161
129
110
2.16
17.27
65.300
4.860
T P
2ipa_A
104
129
91
1.70
15.38
65.269
5.058
T P
2zct_D
238
129
106
1.99
12.26
64.799
5.076
T P
1rqm_A
105
129
96
2.01
16.67
64.522
4.540
T P
2e2g_B
239
129
106
2.01
13.21
64.258
5.020
T P
2pn8_A
191
129
104
2.04
11.54
63.994
4.853
T P
2z9s_A
197
129
108
2.12
14.81
63.779
4.867
T P
1zof_B
175
129
106
2.11
15.09
63.654
4.801
T P
2rii_B
185
129
105
2.11
14.29
63.528
4.760
T P
1oaz_A
115
129
93
2.03
19.35
63.439
4.359
T P
1uul_A
194
129
106
2.01
9.43
62.995
5.023
T P
1zye_A
162
129
103
1.99
13.59
62.877
4.934
T P
2i81_A
193
129
108
2.09
14.81
62.870
4.937
T P
2h01_A
174
129
108
2.18
12.04
62.869
4.743
T P
1qmv_A
196
129
106
2.11
14.15
62.553
4.794
T P
1xxu_A
153
129
107
2.12
14.02
62.425
4.816
T P
2c0d_B
175
129
106
2.04
7.55
62.284
4.959
T P
2nvl_A
242
129
105
1.99
12.38
62.197
5.025
T P
2cv4_D
242
129
107
2.09
13.08
62.050
4.877
T P
2feg_A
169
129
105
2.15
12.38
61.953
4.666
T P
1vgs_D
242
129
107
2.09
14.02
61.880
4.876
T P
1yep_A
168
129
104
1.93
13.46
61.876
5.123
T P
1v98_A
92
129
87
1.66
19.54
61.842
4.940
T P
3erw_A
134
129
88
1.90
17.05
61.294
4.392
T P
1e2y_G
173
129
102
2.05
13.73
59.913
4.751
T P
2bmx_B
178
129
105
2.25
15.24
58.895
4.473
T P
2ywn_A
150
129
104
2.17
16.35
58.559
4.576
T P
1qq2_A
173
129
102
2.20
13.73
58.491
4.426
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]