LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_281.5wLII_11238_9
Total number of 3D structures: 44
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
414 |
363 |
1.73 |
15.98 |
81.957 |
19.843 |
T P |
2ho1_A |
222 |
414 |
186 |
2.02 |
13.44 |
37.392 |
8.757 |
T P |
2fi7_A |
223 |
414 |
183 |
1.94 |
12.02 |
37.319 |
8.953 |
T P |
2vq2_A |
220 |
414 |
183 |
2.02 |
11.48 |
35.993 |
8.646 |
T P |
2q7f_A |
194 |
414 |
175 |
2.16 |
14.29 |
35.829 |
7.750 |
T P |
3edt_B |
258 |
414 |
170 |
2.09 |
12.35 |
34.544 |
7.760 |
T P |
3cv0_A |
300 |
414 |
150 |
1.65 |
14.67 |
33.734 |
8.565 |
T P |
2c0m_C |
302 |
414 |
153 |
1.81 |
13.07 |
33.432 |
8.015 |
T P |
2c0l_A |
292 |
414 |
149 |
1.74 |
14.77 |
33.097 |
8.092 |
T P |
3ceq_B |
269 |
414 |
165 |
2.15 |
12.73 |
33.065 |
7.344 |
T P |
2j9q_A |
300 |
414 |
147 |
1.70 |
13.61 |
32.702 |
8.179 |
T P |
1hh8_A |
192 |
414 |
146 |
1.55 |
10.96 |
32.607 |
8.849 |
T P |
1wm5_A |
205 |
414 |
145 |
1.61 |
11.03 |
32.364 |
8.469 |
T P |
1e96_B |
185 |
414 |
143 |
1.69 |
13.29 |
32.151 |
8.002 |
T P |
1fch_A |
302 |
414 |
149 |
2.02 |
13.42 |
30.881 |
7.045 |
T P |
2gw1_A |
487 |
414 |
181 |
2.32 |
11.05 |
30.796 |
7.485 |
T P |
2vsy_A |
547 |
414 |
151 |
1.98 |
17.88 |
30.664 |
7.257 |
T P |
1xnf_B |
262 |
414 |
158 |
2.14 |
12.03 |
30.483 |
7.048 |
T P |
2fo7_A |
136 |
414 |
136 |
1.47 |
17.65 |
30.371 |
8.654 |
T P |
3cvq_A |
289 |
414 |
146 |
2.07 |
16.44 |
30.033 |
6.737 |
T P |
2pl2_A |
194 |
414 |
160 |
2.19 |
14.38 |
29.636 |
6.976 |
T P |
1p5q_A |
283 |
414 |
122 |
1.30 |
10.66 |
28.574 |
8.718 |
T P |
1wao_1 |
471 |
414 |
132 |
1.90 |
10.61 |
28.535 |
6.603 |
T P |
2vsn_A |
534 |
414 |
143 |
2.03 |
17.48 |
28.308 |
6.727 |
T P |
1qz2_A |
285 |
414 |
120 |
1.19 |
10.83 |
28.246 |
9.308 |
T P |
1na0_A |
119 |
414 |
118 |
0.92 |
22.03 |
27.882 |
11.518 |
T P |
1ihg_A |
364 |
414 |
123 |
1.56 |
13.82 |
27.806 |
7.413 |
T P |
2dba_A |
148 |
414 |
121 |
1.68 |
11.57 |
27.020 |
6.781 |
T P |
2fbn_A |
153 |
414 |
118 |
1.41 |
15.25 |
26.904 |
7.806 |
T P |
1kt1_A |
374 |
414 |
118 |
1.56 |
15.25 |
26.874 |
7.090 |
T P |
1kt0_A |
357 |
414 |
115 |
1.11 |
6.96 |
26.874 |
9.542 |
T P |
2vyi_A |
128 |
414 |
119 |
1.49 |
15.13 |
26.759 |
7.490 |
T P |
1a17_A |
159 |
414 |
119 |
1.63 |
11.76 |
26.652 |
6.881 |
T P |
1elw_A |
117 |
414 |
116 |
1.31 |
18.97 |
26.283 |
8.207 |
T P |
2c2l_A |
281 |
414 |
115 |
1.60 |
16.52 |
26.227 |
6.781 |
T P |
2bug_A |
131 |
414 |
120 |
1.76 |
12.50 |
26.211 |
6.442 |
T P |
1elr_A |
128 |
414 |
115 |
1.82 |
15.65 |
25.415 |
5.999 |
T P |
2if4_A |
258 |
414 |
110 |
2.19 |
8.18 |
22.074 |
4.803 |
T P |
1na3_A |
86 |
414 |
85 |
1.06 |
16.47 |
20.094 |
7.341 |
T P |
1ouv_A |
265 |
414 |
135 |
2.61 |
9.63 |
19.241 |
4.982 |
T P |
1o5m_A |
315 |
414 |
101 |
2.54 |
12.87 |
16.729 |
3.827 |
T P |
2avp_A |
68 |
414 |
68 |
0.87 |
20.59 |
16.180 |
7.044 |
T P |
1o1t_A |
315 |
414 |
101 |
2.62 |
11.88 |
15.458 |
3.708 |
T P |
1xi4_A |
1630 |
414 |
99 |
2.72 |
5.05 |
14.562 |
3.505 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]