LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_285.5wLII_11238_20
Total number of 3D structures: 61
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1pj5_A
827
169
149
1.23
14.77
86.344
11.213
T P
1y56_B
374
169
77
1.87
7.79
40.085
3.907
T P
1x31_B
402
169
79
2.03
11.39
38.552
3.715
T P
1b3m_A
385
169
77
1.90
6.49
38.348
3.858
T P
3bhk_A
385
169
79
2.01
8.86
38.234
3.753
T P
1l9c_A
385
169
78
2.02
7.69
37.948
3.688
T P
2gf3_A
385
169
77
1.95
7.79
37.890
3.761
T P
1el9_A
385
169
77
1.96
7.79
37.886
3.730
T P
2gah_B
403
169
74
2.03
10.81
37.399
3.472
T P
1ng4_A
364
169
73
2.00
10.96
36.946
3.477
T P
1zov_A
381
169
76
2.12
6.58
36.883
3.423
T P
1ryi_A
364
169
76
2.14
14.47
36.612
3.394
T P
2gag_B
403
169
78
2.22
11.54
35.744
3.364
T P
2uzz_B
372
169
77
2.28
6.49
33.085
3.229
T P
1aa8_A
340
169
55
2.01
9.09
26.803
2.611
T P
1an9_A
340
169
51
1.89
13.73
26.454
2.558
T P
3dhy_A
486
169
51
2.80
7.84
19.962
1.761
T P
3g79_A
475
169
50
2.67
4.00
19.385
1.805
T P
2q3e_A
460
169
46
2.43
2.17
19.365
1.820
T P
3ce6_A
486
169
46
2.60
8.70
18.380
1.702
T P
2iat_A
312
169
44
2.62
4.55
17.579
1.620
T P
1n7d_A
639
169
44
2.58
6.82
17.364
1.641
T P
2iao_A
312
169
43
2.62
4.65
17.324
1.581
T P
2iax_A
312
169
44
2.72
4.55
17.090
1.559
T P
2ecf_A
700
169
45
2.68
6.67
17.034
1.619
T P
2iaq_A
312
169
43
2.77
11.63
16.795
1.499
T P
1dli_A
402
169
44
2.78
4.55
16.786
1.525
T P
2iar_A
312
169
43
2.76
9.30
16.722
1.503
T P
2ias_A
312
169
43
2.85
11.63
16.667
1.458
T P
2iaw_A
312
169
45
2.77
6.67
16.313
1.570
T P
1mv8_A
436
169
39
2.50
7.69
16.127
1.500
T P
2o3j_A
465
169
42
2.87
9.52
15.819
1.412
T P
2h6n_B
305
169
43
2.79
4.65
15.680
1.490
T P
3dr2_A
299
169
38
2.63
5.26
15.545
1.394
T P
2gvu_A
312
169
39
2.61
2.56
15.528
1.437
T P
2iav_A
312
169
39
2.67
10.26
15.496
1.409
T P
1q7f_B
282
169
40
2.70
5.00
15.247
1.430
T P
1pjx_A
314
169
36
2.54
8.33
15.137
1.362
T P
2dso_C
323
169
36
2.61
5.56
15.101
1.327
T P
2gvx_A
312
169
38
2.79
7.89
14.892
1.315
T P
2h14_A
303
169
36
2.61
8.33
14.817
1.326
T P
2dg0_A
322
169
35
2.58
8.57
14.779
1.304
T P
2iap_A
312
169
40
2.96
7.50
14.771
1.306
T P
2dg1_B
322
169
36
2.59
5.56
14.649
1.340
T P
2iau_A
312
169
36
2.65
8.33
14.597
1.308
T P
3emh_A
300
169
37
2.75
8.11
14.488
1.298
T P
2h9l_A
321
169
39
2.90
10.26
14.236
1.302
T P
2cnx_A
306
169
37
2.71
8.11
14.205
1.319
T P
2g99_A
304
169
38
2.84
5.26
14.146
1.292
T P
3bws_A
407
169
35
2.90
8.57
13.600
1.167
T P
1muu_A
436
169
32
2.64
18.75
13.596
1.169
T P
2co0_A
304
169
36
2.94
5.56
13.567
1.182
T P
2h9m_A
304
169
32
2.70
6.25
13.515
1.142
T P
2ghs_A
295
169
34
2.77
11.76
13.507
1.183
T P
1dlj_A
402
169
32
2.70
9.38
13.295
1.144
T P
3e5z_A
290
169
32
2.84
12.50
13.012
1.087
T P
1l0q_A
391
169
33
2.66
6.06
12.891
1.194
T P
1rwi_A
256
169
33
2.66
6.06
12.728
1.196
T P
1npe_A
263
169
31
2.84
3.23
12.644
1.053
T P
1ijq_A
308
169
32
2.62
3.12
12.456
1.179
T P
2g9a_A
310
169
31
2.32
6.45
12.436
1.279
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]