LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_292.5wLII_11238_41
Total number of 3D structures: 72
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3bci_A
165
165
157
0.56
17.20
94.649
23.853
T P
3bd2_A
164
165
156
0.57
17.31
94.086
23.363
T P
3bck_A
164
165
156
0.62
16.03
93.955
21.775
T P
2in3_A
204
165
140
1.97
13.57
72.313
6.767
T P
3fz5_C
192
165
131
2.25
9.92
59.330
5.570
T P
2imd_A
203
165
129
2.27
10.85
57.961
5.440
T P
2imf_A
203
165
127
2.12
9.45
57.846
5.721
T P
1r4w_A
221
165
138
2.36
13.77
56.865
5.612
T P
1yzx_A
218
165
136
2.35
13.97
56.328
5.557
T P
1fvk_A
188
165
126
2.39
14.29
53.890
5.070
T P
1bq7_A
186
165
129
2.23
9.30
53.884
5.528
T P
1z6m_A
175
165
127
2.17
15.75
52.976
5.604
T P
2rem_C
191
165
132
2.45
15.15
52.347
5.172
T P
1bed_A
181
165
122
2.28
9.84
52.342
5.136
T P
2b6m_B
188
165
123
2.24
5.69
51.739
5.254
T P
1u3a_E
188
165
126
2.38
10.32
51.607
5.082
T P
1fvj_A
188
165
119
2.28
7.56
50.837
4.995
T P
2b3s_A
187
165
123
2.34
10.57
49.907
5.045
T P
1ac1_A
188
165
119
2.36
7.56
49.854
4.845
T P
1acv_A
188
165
118
2.33
6.78
49.449
4.861
T P
3c7m_A
195
165
122
2.43
11.48
49.161
4.822
T P
2ijy_A
181
165
117
2.43
10.26
49.091
4.618
T P
3feu_A
183
165
118
2.34
17.80
46.675
4.829
T P
2znm_C
186
165
113
2.29
11.50
46.391
4.726
T P
1jzd_A
219
165
102
2.19
19.61
44.176
4.451
T P
1v58_A
229
165
107
2.37
15.89
43.146
4.324
T P
2h0g_A
229
165
109
2.42
10.09
43.126
4.324
T P
1jzo_B
216
165
102
2.25
21.57
42.730
4.337
T P
2i4a_A
107
165
77
1.87
9.09
41.563
3.907
T P
2h0i_A
229
165
95
2.19
16.84
41.343
4.147
T P
2trx_A
108
165
76
1.93
18.42
40.776
3.748
T P
1eej_A
216
165
100
2.39
21.00
40.222
4.020
T P
2h0h_B
230
165
101
2.39
8.91
40.192
4.061
T P
1t3b_A
209
165
95
2.16
15.79
39.898
4.213
T P
2dj1_A
140
165
78
2.05
17.95
39.872
3.625
T P
3f8u_A
469
165
77
2.01
14.29
39.756
3.644
T P
2o8v_B
108
165
74
1.98
16.22
38.971
3.561
T P
1mek_A
120
165
78
2.13
17.95
38.300
3.499
T P
1t00_A
112
165
77
1.97
18.18
38.029
3.724
T P
2h6y_A
107
165
77
2.05
19.48
37.738
3.582
T P
2dj2_A
120
165
76
2.12
15.79
37.317
3.419
T P
3dyr_A
111
165
77
2.00
15.58
37.305
3.660
T P
1quw_A
105
165
76
2.10
15.79
37.181
3.462
T P
2h76_A
108
165
77
2.03
18.18
37.129
3.623
T P
2fch_D
107
165
74
1.97
18.92
36.922
3.574
T P
2eiq_A
107
165
74
1.98
14.86
36.826
3.555
T P
3dxb_D
216
165
77
2.08
18.18
36.710
3.532
T P
1txx_A
108
165
77
2.04
18.18
36.702
3.597
T P
2h70_A
107
165
72
1.98
18.06
36.626
3.468
T P
2h74_A
108
165
77
2.14
16.88
36.589
3.443
T P
2eir_A
107
165
73
1.96
15.07
36.445
3.540
T P
2h72_A
107
165
77
2.16
16.88
36.432
3.407
T P
2eio_A
107
165
75
2.12
17.33
36.338
3.377
T P
2tir_A
108
165
77
2.06
16.88
35.428
3.564
T P
2h6z_A
108
165
77
2.09
18.18
35.407
3.512
T P
1faa_A
121
165
80
2.15
16.25
34.848
3.548
T P
1rqm_A
105
165
73
2.19
16.44
34.815
3.184
T P
2h73_A
108
165
77
2.07
19.48
34.262
3.545
T P
1v98_A
92
165
78
2.08
14.10
34.223
3.580
T P
2b5e_A
483
165
73
1.92
10.96
34.178
3.610
T P
2h75_B
108
165
77
2.12
18.18
34.127
3.466
T P
1nw2_A
105
165
78
2.12
16.67
34.006
3.510
T P
2h71_A
107
165
78
2.24
16.67
33.625
3.336
T P
1zzy_A
106
165
78
2.25
16.67
33.273
3.315
T P
1nsw_A
105
165
77
2.22
16.88
33.210
3.320
T P
1dyv_A
186
165
70
2.09
18.57
33.177
3.199
T P
2i1u_A
108
165
72
2.09
9.72
33.137
3.295
T P
1keb_A
108
165
75
2.09
17.33
33.062
3.418
T P
2oe3_A
106
165
77
2.22
22.08
33.051
3.320
T P
2fd3_A
108
165
73
2.00
17.81
32.416
3.480
T P
1fo5_A
85
165
64
2.47
12.50
24.970
2.491
T P
2iyj_B
75
165
39
2.72
10.26
15.300
1.381
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]