LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_296.5wLII_11238_53.FR_1_700
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1yqi_C
708
523
377
2.02
18.04
59.195
17.807
T P
1ypw_A
692
523
318
2.10
15.41
47.186
14.454
T P
3cf2_A
659
523
311
2.05
14.79
46.616
14.445
T P
1r7r_A
683
523
319
2.08
14.73
46.603
14.615
T P
1s3s_F
441
523
217
1.72
17.97
38.395
11.893
T P
2ce7_C
421
523
214
1.93
17.29
35.398
10.559
T P
2dhr_A
458
523
221
1.99
18.55
35.250
10.590
T P
3eih_A
319
523
207
1.90
17.87
34.635
10.365
T P
1iy2_A
245
523
203
1.93
19.21
34.199
10.004
T P
3eie_A
303
523
206
1.86
18.45
33.693
10.528
T P
3b9p_A
268
523
208
1.93
15.87
33.085
10.268
T P
2qp9_X
288
523
198
1.91
18.18
32.402
9.837
T P
2qz4_A
223
523
190
1.87
18.42
32.151
9.665
T P
3cf0_A
281
523
198
1.91
18.69
31.975
9.874
T P
3d8b_A
281
523
204
2.02
15.20
31.848
9.607
T P
1xwi_A
322
523
197
1.88
20.30
31.118
9.936
T P
2rko_A
280
523
194
2.01
19.07
29.493
9.182
T P
1ixz_A
238
523
186
2.15
18.28
28.488
8.254
T P
2zan_A
312
523
197
1.95
18.78
28.029
9.613
T P
1j7k_A
299
523
185
2.15
13.51
27.598
8.212
T P
1in6_A
300
523
183
2.05
13.11
27.389
8.500
T P
1in8_A
298
523
183
2.06
13.11
27.219
8.476
T P
1in5_A
301
523
183
2.05
13.11
27.087
8.500
T P
1in7_A
298
523
185
2.10
13.51
26.982
8.422
T P
1in4_A
298
523
182
2.08
13.74
26.906
8.346
T P
2r62_A
249
523
188
2.15
15.43
26.561
8.366
T P
1lv7_A
251
523
196
2.05
15.82
26.154
9.101
T P
1ixs_B
315
523
180
2.21
11.67
25.642
7.789
T P
1hqc_A
314
523
177
2.09
11.30
25.072
8.072
T P
1ixr_C
308
523
179
2.24
11.17
24.857
7.650
T P
1r6b_X
704
523
174
2.24
11.49
22.533
7.428
T P
2chq_A
313
523
163
2.29
10.43
22.458
6.829
T P
1sxj_A
441
523
177
2.39
11.86
22.399
7.096
T P
1ny5_B
385
523
167
2.26
11.38
22.158
7.090
T P
1sxj_B
316
523
167
2.24
12.57
21.737
7.131
T P
1sxj_C
322
523
165
2.24
11.52
21.717
7.047
T P
1nsf_A
247
523
165
2.34
14.55
21.710
6.764
T P
1xxi_C
366
523
152
2.21
12.50
21.567
6.581
T P
1d2n_A
246
523
166
2.35
15.06
21.536
6.767
T P
2c9o_A
398
523
164
2.36
15.85
21.376
6.679
T P
1qvr_A
803
523
175
2.42
12.57
21.331
6.954
T P
1g4a_E
356
523
166
2.33
14.46
21.300
6.845
T P
1sxj_D
328
523
167
2.33
11.38
20.892
6.872
T P
1g41_A
334
523
161
2.34
17.39
20.668
6.585
T P
2z4s_A
240
523
163
2.23
12.27
20.665
6.996
T P
1e94_F
408
523
166
2.29
15.66
20.610
6.954
T P
1im2_A
346
523
164
2.33
12.80
20.185
6.759
T P
1doo_E
393
523
162
2.33
14.81
20.098
6.675
T P
1ofh_A
309
523
163
2.33
12.88
20.096
6.708
T P
1um8_A
327
523
155
2.44
12.90
20.080
6.105
T P
1ojl_D
297
523
162
2.39
13.58
19.886
6.498
T P
1njg_A
240
523
148
2.36
11.49
19.784
6.014
T P
1jr3_A
366
523
151
2.28
13.25
19.750
6.346
T P
1iqp_A
326
523
147
2.24
11.56
19.735
6.292
T P
2hcb_D
320
523
155
2.30
13.55
19.560
6.456
T P
1l8q_A
321
523
157
2.48
10.19
18.936
6.089
T P
2chg_A
223
523
136
2.23
10.29
18.876
5.845
T P
2dvw_B
73
523
60
1.97
11.67
9.497
2.905
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]