LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_299.5wLII_11238_60
Total number of 3D structures: 89
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3c0k_A
395
389
388
0.46
28.35
99.316
69.820
T P
2as0_A
396
389
374
1.56
29.68
88.569
22.475
T P
2b78_A
376
389
342
1.81
14.91
79.347
17.900
T P
2cww_B
382
389
351
2.02
29.63
72.009
16.535
T P
1wxx_A
382
389
331
2.04
29.31
64.955
15.437
T P
2igt_A
313
389
197
1.90
17.77
44.197
9.868
T P
2yx1_A
323
389
199
1.95
14.57
40.019
9.691
T P
2frn_A
248
389
197
2.30
14.21
36.461
8.204
T P
3c3y_A
225
389
163
1.98
12.88
35.464
7.853
T P
1uwv_A
417
389
185
2.20
22.16
34.099
8.050
T P
1dus_A
194
389
161
1.98
13.04
34.016
7.756
T P
2jjq_A
392
389
177
2.19
19.21
33.253
7.726
T P
2yxl_A
443
389
168
2.14
20.83
33.116
7.502
T P
2r3s_A
330
389
164
2.16
15.24
33.008
7.266
T P
3cjt_A
254
389
152
1.99
13.82
32.956
7.285
T P
2frx_A
455
389
166
2.15
16.87
32.669
7.388
T P
2bh2_A
418
389
178
2.27
17.42
32.636
7.522
T P
2vs1_A
398
389
184
2.27
17.39
32.624
7.761
T P
2fpo_C
181
389
146
1.97
12.33
32.622
7.048
T P
1l3i_A
186
389
149
1.96
14.09
32.064
7.219
T P
3e7p_A
253
389
152
1.90
11.18
31.822
7.590
T P
1sui_A
227
389
156
2.02
10.90
31.469
7.366
T P
1sqg_A
424
389
168
2.23
15.48
31.468
7.215
T P
2nxc_A
249
389
151
1.92
14.57
31.130
7.479
T P
2fhp_A
183
389
152
2.03
17.76
30.998
7.140
T P
1o54_A
265
389
147
1.98
14.29
30.883
7.083
T P
1xcj_A
229
389
147
2.08
15.65
30.542
6.729
T P
3bt7_A
369
389
169
2.29
14.79
30.296
7.082
T P
3dmg_A
371
389
146
1.97
19.86
30.269
7.041
T P
2b3t_A
276
389
165
2.14
15.15
29.953
7.382
T P
2yvl_A
247
389
146
2.04
12.33
29.672
6.837
T P
1t43_A
274
389
164
2.17
15.24
29.628
7.209
T P
3duw_A
220
389
157
2.09
12.10
29.533
7.185
T P
1wy7_D
204
389
146
2.03
15.75
29.476
6.846
T P
2ift_A
176
389
139
1.89
18.71
29.375
7.000
T P
1zx0_C
230
389
146
2.12
12.33
29.266
6.574
T P
1wzn_A
244
389
140
2.08
17.14
29.231
6.420
T P
1vl5_A
231
389
145
2.12
13.10
29.101
6.545
T P
1ws6_A
171
389
139
2.02
19.42
29.006
6.552
T P
3e05_B
192
389
146
2.19
15.07
28.873
6.388
T P
3bkw_A
219
389
141
2.07
19.15
28.536
6.502
T P
1p1c_A
193
389
144
2.22
13.89
28.457
6.215
T P
1khh_A
193
389
138
2.07
14.49
28.406
6.350
T P
3bus_A
251
389
154
2.23
16.88
28.303
6.615
T P
1sg9_A
274
389
150
2.23
14.00
28.291
6.448
T P
1nv8_A
271
389
149
2.20
15.44
28.227
6.472
T P
2esr_A
160
389
133
1.99
17.29
28.036
6.372
T P
3f4k_A
254
389
149
2.12
11.41
27.954
6.703
T P
1ixk_A
305
389
154
2.20
17.53
27.919
6.694
T P
2yxd_A
180
389
146
2.23
11.64
27.904
6.269
T P
1ne2_B
184
389
143
2.06
16.08
27.517
6.628
T P
1kph_B
285
389
152
2.26
15.79
27.384
6.451
T P
1vq1_A
266
389
143
2.19
15.38
27.363
6.234
T P
1kpi_A
291
389
149
2.25
16.11
27.102
6.328
T P
2b9e_A
275
389
157
2.27
15.29
26.972
6.625
T P
1l1e_A
272
389
148
2.19
14.86
26.900
6.469
T P
1tpy_A
285
389
150
2.24
14.67
26.678
6.414
T P
1xxl_A
234
389
143
2.26
11.89
26.575
6.065
T P
1nt2_A
209
389
142
2.06
12.68
26.535
6.567
T P
2fk8_A
281
389
150
2.31
15.33
26.436
6.222
T P
3d2l_C
242
389
142
2.22
19.01
26.378
6.117
T P
2i62_B
261
389
148
2.19
18.24
26.012
6.470
T P
3evz_A
197
389
153
2.37
12.42
26.005
6.197
T P
1i9g_A
264
389
141
2.16
14.18
25.998
6.226
T P
1nkv_C
249
389
141
2.24
19.15
25.993
6.026
T P
1xva_A
292
389
139
2.14
19.42
25.839
6.192
T P
2iip_A
265
389
145
2.20
21.38
25.714
6.299
T P
2gpy_B
192
389
138
2.15
15.22
25.500
6.142
T P
1r8x_B
284
389
138
2.21
19.57
25.441
5.979
T P
1adm_A
415
389
136
2.21
20.59
24.739
5.876
T P
1ve3_B
226
389
137
2.21
15.33
24.669
5.921
T P
1d2g_A
292
389
136
2.24
16.18
24.640
5.808
T P
3dlc_A
219
389
130
2.35
15.38
24.560
5.308
T P
2pjd_A
334
389
136
2.23
13.24
24.526
5.832
T P
2fyt_A
311
389
120
2.14
18.33
24.162
5.356
T P
1g38_A
393
389
130
2.21
21.54
23.902
5.639
T P
1aqj_B
383
389
125
2.04
23.20
23.786
5.828
T P
1g6q_1
328
389
123
2.13
18.70
23.758
5.507
T P
2ih2_A
393
389
129
2.12
23.26
23.753
5.803
T P
1jg1_A
215
389
115
2.13
14.78
23.548
5.159
T P
1f3l_A
321
389
121
2.16
19.83
23.536
5.347
T P
1or8_A
313
389
115
2.04
18.26
23.281
5.368
T P
1ori_A
316
389
119
2.17
16.81
23.214
5.254
T P
3b3j_A
332
389
123
2.28
16.26
23.195
5.159
T P
3b3f_A
337
389
114
2.09
18.42
23.180
5.216
T P
2yxe_A
214
389
119
2.13
16.81
23.085
5.336
T P
1dl5_A
317
389
118
2.26
13.56
22.717
5.000
T P
2v74_D
332
389
114
2.12
17.54
22.361
5.134
T P
1orh_A
318
389
110
2.05
18.18
22.064
5.120
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]