LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_3.5wLII_08492_1
Total number of 3D structures: 67
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3c3w_A
211
200
182
0.94
16.48
89.042
17.515
T P
1a2o_A
347
200
94
1.81
11.70
42.637
4.934
T P
2gwr_A
225
200
87
1.69
8.05
41.047
4.849
T P
1w25_A
454
200
87
1.45
10.34
40.945
5.599
T P
1qmp_A
125
200
85
1.58
4.71
40.068
5.062
T P
1p2f_A
217
200
88
1.78
6.82
39.549
4.674
T P
3eul_B
124
200
86
1.68
11.63
39.535
4.832
T P
1ab5_A
125
200
85
1.68
17.65
39.439
4.765
T P
1vlz_A
128
200
85
1.79
17.65
39.423
4.500
T P
1d4z_A
128
200
86
1.87
17.44
39.200
4.372
T P
1ys7_B
226
200
88
1.90
9.09
39.188
4.407
T P
2jba_A
125
200
85
1.80
12.94
38.773
4.470
T P
1b00_A
122
200
85
1.75
12.94
38.750
4.582
T P
3cz5_C
142
200
80
1.28
16.25
38.667
5.816
T P
3f6c_A
129
200
85
1.79
14.12
38.323
4.507
T P
1ny5_B
385
200
84
1.77
10.71
37.734
4.484
T P
1s8n_A
190
200
85
1.96
14.12
37.578
4.122
T P
1ymu_A
125
200
81
1.69
18.52
37.539
4.516
T P
1yio_A
198
200
82
1.69
8.54
37.428
4.582
T P
1zes_A
121
200
78
1.50
12.82
37.342
4.867
T P
1u0s_Y
118
200
75
1.45
16.00
36.930
4.829
T P
1dz3_A
123
200
77
1.53
6.49
36.914
4.728
T P
1tmy_A
118
200
75
1.53
16.00
36.671
4.599
T P
3b2n_A
120
200
80
1.83
8.75
36.611
4.137
T P
2j8e_A
128
200
79
1.83
16.46
36.508
4.091
T P
2a9o_A
117
200
76
1.48
13.16
36.406
4.821
T P
1mih_A
128
200
77
1.77
16.88
36.325
4.116
T P
2a9r_A
117
200
76
1.62
11.84
36.305
4.406
T P
2oqr_A
226
200
79
1.80
8.86
35.986
4.163
T P
2chy_A
128
200
76
1.67
18.42
35.921
4.295
T P
3bre_B
328
200
77
1.69
9.09
35.478
4.295
T P
2iyn_B
124
200
75
1.51
13.33
35.355
4.662
T P
1a04_A
205
200
78
1.86
11.54
35.283
3.988
T P
1mvo_A
121
200
75
1.62
13.33
35.237
4.354
T P
2jb9_B
122
200
75
1.63
13.33
34.954
4.338
T P
2jba_B
121
200
75
1.72
13.33
34.511
4.128
T P
2qsj_B
122
200
75
1.87
12.00
33.841
3.811
T P
1dc7_A
124
200
73
1.98
8.22
31.509
3.518
T P
3g13_A
152
200
78
2.31
8.97
28.681
3.231
T P
1p4w_A
87
200
58
1.80
18.97
26.761
3.059
T P
1s7o_C
108
200
57
1.64
22.81
25.573
3.274
T P
2r0q_C
193
200
78
2.61
5.13
24.634
2.882
T P
3bvp_A
136
200
71
2.51
7.04
24.413
2.715
T P
1x3u_A
79
200
51
1.67
21.57
23.842
2.880
T P
1je8_E
67
200
49
1.18
20.41
23.811
3.837
T P
2hwv_A
101
200
55
1.97
12.73
23.137
2.660
T P
2rnj_A
67
200
49
1.53
22.45
23.090
3.007
T P
2gm5_A
122
200
71
2.63
5.63
23.078
2.597
T P
1gdt_A
183
200
67
2.33
10.45
22.994
2.760
T P
3c57_A
51
200
46
0.76
23.91
22.686
5.367
T P
1zlj_A
69
200
45
0.52
24.44
22.500
7.277
T P
2rsl_B
120
200
67
2.64
5.97
21.976
2.445
T P
1zr4_A
183
200
63
2.40
11.11
21.671
2.519
T P
1ght_A
105
200
64
2.40
4.69
21.244
2.560
T P
2gm4_A
179
200
62
2.48
8.06
21.136
2.399
T P
2zb9_A
188
200
59
2.30
6.78
21.118
2.460
T P
1dc8_A
123
200
59
2.45
10.17
20.226
2.318
T P
2jpc_A
61
200
42
1.29
26.19
20.035
3.020
T P
1res_A
43
200
40
1.67
25.00
18.535
2.266
T P
1jko_C
46
200
37
1.43
18.92
17.327
2.424
T P
2jn6_A
97
200
47
2.32
6.38
17.079
1.944
T P
3cwo_X
236
200
51
2.62
7.84
17.052
1.873
T P
2rae_A
193
200
48
2.63
4.17
16.542
1.759
T P
1umq_A
60
200
42
2.12
7.14
15.742
1.892
T P
1fse_B
70
200
42
2.37
7.14
15.715
1.700
T P
3clo_A
258
200
41
2.66
12.20
14.205
1.484
T P
2elh_A
87
200
37
2.64
8.11
12.998
1.350
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]