LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_309.5wLII_11238_93
Total number of 3D structures: 52
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2p11_A
219
222
218
0.44
44.04
97.839
40.427
T P
2w4m_A
250
222
175
1.99
14.86
57.724
8.373
T P
2gfh_A
246
222
174
2.09
14.94
56.260
7.958
T P
2hoq_A
237
222
159
2.06
23.90
56.184
7.367
T P
3ed5_A
232
222
167
2.09
19.16
55.845
7.618
T P
1x42_A
230
222
165
2.23
16.97
54.661
7.088
T P
2om6_A
233
222
165
2.15
16.36
53.959
7.341
T P
3ddh_A
229
222
162
2.17
19.75
52.269
7.150
T P
1aq6_A
245
222
155
2.02
16.77
51.698
7.298
T P
1qq7_A
244
222
155
2.08
16.77
51.500
7.110
T P
2pib_A
216
222
155
2.03
11.61
51.412
7.282
T P
1qq5_A
245
222
151
2.03
16.56
51.195
7.104
T P
2no5_B
225
222
150
2.17
13.33
50.842
6.611
T P
1qh9_A
220
222
158
2.14
13.92
50.751
7.046
T P
1zrn_A
220
222
156
2.11
14.10
50.687
7.058
T P
2no4_B
226
222
155
2.24
13.55
50.383
6.610
T P
2nyv_A
217
222
152
2.08
18.42
49.202
6.962
T P
2ioh_A
256
222
152
2.34
14.47
46.978
6.220
T P
1qyi_A
380
222
152
2.10
13.16
46.672
6.899
T P
2hsz_A
225
222
149
2.15
18.79
46.534
6.611
T P
2ah5_A
210
222
145
2.18
17.24
46.510
6.353
T P
3e58_A
211
222
137
2.17
13.14
46.505
6.043
T P
1fez_A
256
222
139
2.12
15.83
46.004
6.272
T P
1rdf_A
263
222
146
2.26
12.33
45.844
6.190
T P
2w11_A
206
222
144
2.26
13.89
45.692
6.095
T P
2yy6_A
208
222
143
2.02
18.18
45.531
6.743
T P
2iof_A
256
222
141
2.09
14.89
45.001
6.429
T P
2hcf_A
225
222
139
2.12
16.55
44.922
6.274
T P
2w43_A
201
222
149
2.45
14.09
44.914
5.836
T P
2fdr_A
222
222
145
2.19
13.10
44.880
6.325
T P
2hi0_A
240
222
143
2.17
11.89
44.858
6.296
T P
1rql_A
257
222
143
2.24
13.99
44.194
6.105
T P
2iof_K
255
222
141
2.21
14.89
43.947
6.097
T P
1swv_A
257
222
138
2.11
13.77
43.906
6.244
T P
3d6j_A
210
222
133
2.06
21.80
42.958
6.170
T P
2hdo_A
207
222
137
2.14
11.68
42.941
6.103
T P
1o08_A
221
222
133
2.31
12.03
42.777
5.529
T P
1wvi_A
253
222
126
2.07
13.49
42.366
5.817
T P
3dv9_A
243
222
136
2.18
14.71
42.289
5.961
T P
1ydf_A
255
222
123
2.00
13.01
42.017
5.865
T P
1lvh_A
220
222
139
2.31
10.79
41.818
5.760
T P
1j97_A
210
222
136
2.23
16.91
41.791
5.837
T P
2go7_C
205
222
135
2.26
15.56
41.678
5.716
T P
1te2_A
218
222
136
2.35
11.76
41.628
5.544
T P
1f5s_A
210
222
134
2.26
17.16
41.409
5.675
T P
2zg6_B
203
222
122
2.04
13.93
41.071
5.709
T P
1l7m_B
210
222
133
2.21
16.54
40.927
5.751
T P
2fi1_A
187
222
125
2.16
12.80
40.591
5.540
T P
2qlt_A
251
222
129
2.27
13.18
39.771
5.448
T P
1yv9_A
257
222
124
2.07
15.32
39.769
5.723
T P
2b8e_C
254
222
136
2.42
14.71
39.063
5.407
T P
2iye_A
249
222
129
2.34
13.95
37.441
5.297
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]