LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_312.5wLII_11238_104
Total number of 3D structures: 61
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1w3b_A
388
314
279
1.45
15.77
84.709
18.030
T P
2vq2_A
220
314
190
1.95
10.53
52.434
9.252
T P
2fi7_A
223
314
178
1.87
14.04
50.762
9.017
T P
2ho1_A
222
314
175
1.92
14.86
49.017
8.683
T P
2gw1_A
487
314
191
2.11
17.80
45.827
8.635
T P
3cv0_A
300
314
146
1.72
10.27
43.192
8.030
T P
2c0l_A
292
314
144
1.65
14.58
42.972
8.209
T P
2pl2_A
194
314
154
1.96
17.53
42.587
7.491
T P
1xnf_B
262
314
161
2.07
10.56
42.221
7.417
T P
3cvq_A
289
314
143
1.69
9.79
42.185
8.010
T P
1hh8_A
192
314
142
1.61
13.38
42.030
8.308
T P
1e96_B
185
314
143
1.74
13.29
42.020
7.751
T P
1wm5_A
205
314
142
1.70
12.68
41.741
7.908
T P
1fch_A
302
314
143
1.80
14.69
41.319
7.543
T P
2fo7_A
136
314
132
0.97
14.39
40.924
12.309
T P
1hz4_A
366
314
180
2.37
12.22
40.252
7.301
T P
2e2e_A
171
314
132
1.74
15.15
38.550
7.174
T P
3edt_B
258
314
157
2.31
12.10
38.418
6.508
T P
1wao_1
471
314
126
1.67
11.90
37.573
7.123
T P
3ceq_B
269
314
155
2.14
12.90
37.513
6.932
T P
2q7f_A
194
314
153
2.31
11.11
36.713
6.358
T P
2vsy_A
547
314
144
2.18
9.03
36.579
6.305
T P
2qfc_A
284
314
144
2.17
9.03
36.065
6.342
T P
2c2l_A
281
314
121
1.72
11.57
35.645
6.649
T P
1ihg_A
364
314
115
1.22
14.78
35.398
8.733
T P
1a17_A
159
314
119
1.49
12.61
35.350
7.502
T P
1kt1_A
374
314
116
1.26
13.79
35.177
8.505
T P
1p5q_A
283
314
118
1.62
18.64
34.951
6.869
T P
2dba_A
148
314
119
1.76
11.76
34.736
6.385
T P
1qz2_A
285
314
118
1.67
18.64
34.716
6.683
T P
1elw_A
117
314
116
1.40
17.24
34.529
7.742
T P
2vyi_A
128
314
115
1.41
11.30
34.375
7.617
T P
2bug_A
131
314
121
1.89
11.57
34.280
6.082
T P
1kt0_A
357
314
112
1.31
12.50
34.142
7.929
T P
2j9q_A
300
314
139
2.32
11.51
34.027
5.753
T P
1elr_A
128
314
116
1.64
11.21
33.913
6.661
T P
1na0_A
119
314
114
1.60
14.04
33.673
6.704
T P
2c0m_C
302
314
140
2.33
13.57
33.515
5.756
T P
2fbn_A
153
314
114
1.62
11.40
33.365
6.617
T P
2if4_A
258
314
109
1.93
12.84
29.466
5.363
T P
1na3_A
86
314
84
1.18
17.86
25.786
6.549
T P
1ouv_A
265
314
127
2.63
14.17
25.000
4.657
T P
2avp_A
68
314
67
1.00
19.40
20.846
6.067
T P
1xi4_A
1630
314
100
2.77
6.00
19.613
3.480
T P
1wp9_A
479
314
65
2.58
12.31
14.084
2.427
T P
3cvu_A
501
314
65
2.83
9.23
13.824
2.217
T P
2j4d_B
499
314
64
2.85
10.94
13.245
2.172
T P
1np7_A
483
314
61
2.73
3.28
12.940
2.157
T P
1dnp_A
469
314
61
2.72
4.92
12.935
2.163
T P
1u3d_A
485
314
66
2.77
4.55
12.874
2.304
T P
2e0i_B
431
314
62
2.73
8.06
12.153
2.188
T P
1gm5_A
729
314
62
2.67
3.23
12.125
2.240
T P
2ijg_X
492
314
55
2.69
5.45
11.848
1.972
T P
2eyq_A
1146
314
55
2.74
9.09
11.542
1.936
T P
1qnf_A
475
314
54
2.85
5.56
11.312
1.833
T P
1tez_A
474
314
47
2.58
4.26
10.620
1.753
T P
2qpq_A
296
314
48
2.56
6.25
10.521
1.807
T P
2dvz_A
300
314
47
2.70
10.64
10.273
1.678
T P
3b6e_A
182
314
49
2.76
12.24
9.729
1.713
T P
2f5x_B
300
314
40
2.65
5.00
8.515
1.457
T P
2j07_A
419
314
32
2.78
6.25
6.718
1.109
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]