LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_312.5wLII_11238_104
Total number of 3D structures: 61
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1w3b_A |
388 |
314 |
279 |
1.45 |
15.77 |
84.709 |
18.030 |
T P |
2vq2_A |
220 |
314 |
190 |
1.95 |
10.53 |
52.434 |
9.252 |
T P |
2fi7_A |
223 |
314 |
178 |
1.87 |
14.04 |
50.762 |
9.017 |
T P |
2ho1_A |
222 |
314 |
175 |
1.92 |
14.86 |
49.017 |
8.683 |
T P |
2gw1_A |
487 |
314 |
191 |
2.11 |
17.80 |
45.827 |
8.635 |
T P |
3cv0_A |
300 |
314 |
146 |
1.72 |
10.27 |
43.192 |
8.030 |
T P |
2c0l_A |
292 |
314 |
144 |
1.65 |
14.58 |
42.972 |
8.209 |
T P |
2pl2_A |
194 |
314 |
154 |
1.96 |
17.53 |
42.587 |
7.491 |
T P |
1xnf_B |
262 |
314 |
161 |
2.07 |
10.56 |
42.221 |
7.417 |
T P |
3cvq_A |
289 |
314 |
143 |
1.69 |
9.79 |
42.185 |
8.010 |
T P |
1hh8_A |
192 |
314 |
142 |
1.61 |
13.38 |
42.030 |
8.308 |
T P |
1e96_B |
185 |
314 |
143 |
1.74 |
13.29 |
42.020 |
7.751 |
T P |
1wm5_A |
205 |
314 |
142 |
1.70 |
12.68 |
41.741 |
7.908 |
T P |
1fch_A |
302 |
314 |
143 |
1.80 |
14.69 |
41.319 |
7.543 |
T P |
2fo7_A |
136 |
314 |
132 |
0.97 |
14.39 |
40.924 |
12.309 |
T P |
1hz4_A |
366 |
314 |
180 |
2.37 |
12.22 |
40.252 |
7.301 |
T P |
2e2e_A |
171 |
314 |
132 |
1.74 |
15.15 |
38.550 |
7.174 |
T P |
3edt_B |
258 |
314 |
157 |
2.31 |
12.10 |
38.418 |
6.508 |
T P |
1wao_1 |
471 |
314 |
126 |
1.67 |
11.90 |
37.573 |
7.123 |
T P |
3ceq_B |
269 |
314 |
155 |
2.14 |
12.90 |
37.513 |
6.932 |
T P |
2q7f_A |
194 |
314 |
153 |
2.31 |
11.11 |
36.713 |
6.358 |
T P |
2vsy_A |
547 |
314 |
144 |
2.18 |
9.03 |
36.579 |
6.305 |
T P |
2qfc_A |
284 |
314 |
144 |
2.17 |
9.03 |
36.065 |
6.342 |
T P |
2c2l_A |
281 |
314 |
121 |
1.72 |
11.57 |
35.645 |
6.649 |
T P |
1ihg_A |
364 |
314 |
115 |
1.22 |
14.78 |
35.398 |
8.733 |
T P |
1a17_A |
159 |
314 |
119 |
1.49 |
12.61 |
35.350 |
7.502 |
T P |
1kt1_A |
374 |
314 |
116 |
1.26 |
13.79 |
35.177 |
8.505 |
T P |
1p5q_A |
283 |
314 |
118 |
1.62 |
18.64 |
34.951 |
6.869 |
T P |
2dba_A |
148 |
314 |
119 |
1.76 |
11.76 |
34.736 |
6.385 |
T P |
1qz2_A |
285 |
314 |
118 |
1.67 |
18.64 |
34.716 |
6.683 |
T P |
1elw_A |
117 |
314 |
116 |
1.40 |
17.24 |
34.529 |
7.742 |
T P |
2vyi_A |
128 |
314 |
115 |
1.41 |
11.30 |
34.375 |
7.617 |
T P |
2bug_A |
131 |
314 |
121 |
1.89 |
11.57 |
34.280 |
6.082 |
T P |
1kt0_A |
357 |
314 |
112 |
1.31 |
12.50 |
34.142 |
7.929 |
T P |
2j9q_A |
300 |
314 |
139 |
2.32 |
11.51 |
34.027 |
5.753 |
T P |
1elr_A |
128 |
314 |
116 |
1.64 |
11.21 |
33.913 |
6.661 |
T P |
1na0_A |
119 |
314 |
114 |
1.60 |
14.04 |
33.673 |
6.704 |
T P |
2c0m_C |
302 |
314 |
140 |
2.33 |
13.57 |
33.515 |
5.756 |
T P |
2fbn_A |
153 |
314 |
114 |
1.62 |
11.40 |
33.365 |
6.617 |
T P |
2if4_A |
258 |
314 |
109 |
1.93 |
12.84 |
29.466 |
5.363 |
T P |
1na3_A |
86 |
314 |
84 |
1.18 |
17.86 |
25.786 |
6.549 |
T P |
1ouv_A |
265 |
314 |
127 |
2.63 |
14.17 |
25.000 |
4.657 |
T P |
2avp_A |
68 |
314 |
67 |
1.00 |
19.40 |
20.846 |
6.067 |
T P |
1xi4_A |
1630 |
314 |
100 |
2.77 |
6.00 |
19.613 |
3.480 |
T P |
1wp9_A |
479 |
314 |
65 |
2.58 |
12.31 |
14.084 |
2.427 |
T P |
3cvu_A |
501 |
314 |
65 |
2.83 |
9.23 |
13.824 |
2.217 |
T P |
2j4d_B |
499 |
314 |
64 |
2.85 |
10.94 |
13.245 |
2.172 |
T P |
1np7_A |
483 |
314 |
61 |
2.73 |
3.28 |
12.940 |
2.157 |
T P |
1dnp_A |
469 |
314 |
61 |
2.72 |
4.92 |
12.935 |
2.163 |
T P |
1u3d_A |
485 |
314 |
66 |
2.77 |
4.55 |
12.874 |
2.304 |
T P |
2e0i_B |
431 |
314 |
62 |
2.73 |
8.06 |
12.153 |
2.188 |
T P |
1gm5_A |
729 |
314 |
62 |
2.67 |
3.23 |
12.125 |
2.240 |
T P |
2ijg_X |
492 |
314 |
55 |
2.69 |
5.45 |
11.848 |
1.972 |
T P |
2eyq_A |
1146 |
314 |
55 |
2.74 |
9.09 |
11.542 |
1.936 |
T P |
1qnf_A |
475 |
314 |
54 |
2.85 |
5.56 |
11.312 |
1.833 |
T P |
1tez_A |
474 |
314 |
47 |
2.58 |
4.26 |
10.620 |
1.753 |
T P |
2qpq_A |
296 |
314 |
48 |
2.56 |
6.25 |
10.521 |
1.807 |
T P |
2dvz_A |
300 |
314 |
47 |
2.70 |
10.64 |
10.273 |
1.678 |
T P |
3b6e_A |
182 |
314 |
49 |
2.76 |
12.24 |
9.729 |
1.713 |
T P |
2f5x_B |
300 |
314 |
40 |
2.65 |
5.00 |
8.515 |
1.457 |
T P |
2j07_A |
419 |
314 |
32 |
2.78 |
6.25 |
6.718 |
1.109 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]