LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_314.5wLII_11238_109
Total number of 3D structures: 89
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1m70_A
190
190
179
0.37
29.05
94.047
38.230
T P
1h1o_A
172
190
160
1.46
32.50
80.150
10.277
T P
1fcd_C
174
190
156
1.90
19.87
68.666
7.811
T P
1cno_G
87
190
81
1.15
35.80
41.600
6.460
T P
1c53_A
79
190
72
1.34
33.33
37.013
5.004
T P
1dvh_A
79
190
72
1.32
29.17
36.990
5.059
T P
2dvh_A
79
190
74
1.65
28.38
36.027
4.239
T P
1e2r_B
543
190
73
1.93
21.92
34.371
3.595
T P
1hzu_A
521
190
75
2.11
21.33
33.771
3.389
T P
1hzv_A
514
190
71
2.09
21.13
32.027
3.238
T P
1gq1_A
559
190
69
2.09
23.19
31.516
3.146
T P
1qks_A
559
190
66
1.98
25.76
31.389
3.177
T P
1e08_E
78
190
72
1.94
27.78
31.031
3.530
T P
1kv9_A
664
190
82
2.39
18.29
30.022
3.299
T P
1mg2_D
147
190
73
1.96
20.55
29.943
3.541
T P
1hj5_A
559
190
67
1.99
23.88
29.797
3.207
T P
2gc4_D
147
190
73
1.94
20.55
29.776
3.573
T P
1c52_A
131
190
66
1.93
22.73
29.524
3.254
T P
1nir_B
539
190
76
2.18
25.00
29.418
3.328
T P
2d0w_A
168
190
73
2.06
16.44
29.173
3.383
T P
1kb0_A
669
190
75
2.22
16.00
28.602
3.239
T P
2c1d_A
264
190
78
2.44
15.38
28.455
3.072
T P
1h32_A
261
190
77
2.34
15.58
28.404
3.154
T P
1yiq_A
684
190
84
2.54
17.86
28.346
3.183
T P
1c6r_A
88
190
67
1.90
23.88
28.177
3.354
T P
1f1f_A
88
190
67
1.86
22.39
27.989
3.411
T P
1umm_A
149
190
69
1.98
15.94
27.988
3.310
T P
2ce0_A
99
190
69
2.12
21.74
27.819
3.101
T P
1gdv_A
85
190
69
1.98
17.39
27.627
3.321
T P
1ctj_A
89
190
68
2.02
25.00
27.619
3.211
T P
2zbo_A
86
190
70
1.97
18.57
27.594
3.385
T P
1ls9_A
91
190
70
2.01
21.43
27.413
3.311
T P
1w2l_A
97
190
70
1.99
22.86
27.232
3.356
T P
2dge_A
102
190
69
2.12
17.39
26.927
3.107
T P
2v08_A
84
190
68
2.05
22.06
26.902
3.169
T P
1cyj_A
90
190
67
1.96
26.87
26.557
3.254
T P
1chh_A
108
190
71
2.29
16.90
26.425
2.976
T P
1kib_A
89
190
66
1.95
19.70
26.341
3.225
T P
1wej_F
104
190
69
2.15
24.64
26.306
3.062
T P
1irv_A
108
190
70
2.27
17.14
26.289
2.949
T P
2bcn_B
108
190
69
2.16
15.94
26.215
3.056
T P
2c1d_B
137
190
68
2.14
20.59
26.191
3.032
T P
1s6v_B
108
190
69
2.21
17.39
26.042
2.981
T P
2v07_A
98
190
65
1.90
23.08
26.039
3.252
T P
3cxh_W
112
190
70
2.32
15.71
25.789
2.892
T P
1yeb_A
108
190
67
2.13
14.93
25.615
3.007
T P
1c6s_A
87
190
66
2.02
22.73
25.606
3.120
T P
1crh_A
108
190
70
2.35
15.71
25.564
2.859
T P
1crg_A
108
190
71
2.39
14.08
25.555
2.846
T P
1ctz_A
108
190
70
2.32
15.71
25.533
2.889
T P
1csw_A
108
190
68
2.27
16.18
25.527
2.869
T P
1chj_A
108
190
70
2.36
15.71
25.491
2.845
T P
1yea_A
112
190
69
2.31
13.04
25.481
2.862
T P
1raq_A
108
190
62
2.11
14.52
25.466
2.804
T P
1irw_A
108
190
71
2.42
14.08
25.455
2.818
T P
1cig_A
108
190
70
2.35
14.29
25.453
2.855
T P
1cyc_A
103
190
68
2.23
27.94
25.299
2.917
T P
2fwl_A
129
190
67
2.44
23.88
25.271
2.636
T P
1ytc_A
112
190
70
2.35
15.71
25.189
2.856
T P
2ycc_A
108
190
69
2.40
18.84
25.152
2.755
T P
1csv_A
108
190
67
2.13
14.93
25.068
3.002
T P
1i54_A
103
190
63
2.10
30.16
24.885
2.868
T P
2b11_B
108
190
63
2.15
12.70
24.807
2.802
T P
3cx5_W
108
190
65
2.19
15.38
24.803
2.843
T P
1ycc_A
108
190
64
2.19
14.06
24.792
2.790
T P
2jqr_A
108
190
64
2.19
14.06
24.792
2.790
T P
2b4z_A
104
190
64
2.12
26.56
24.781
2.878
T P
1dt1_A
129
190
69
2.38
15.94
24.532
2.777
T P
2b0z_B
108
190
63
2.10
17.46
24.383
2.859
T P
1yfc_A
108
190
68
2.28
17.65
24.369
2.858
T P
1wve_C
75
190
62
2.20
24.19
24.246
2.691
T P
2jti_B
103
190
64
2.27
12.50
24.073
2.697
T P
2b12_B
108
190
61
2.09
18.03
23.979
2.779
T P
1cri_A
108
190
62
2.32
8.06
23.772
2.561
T P
1j3s_A
104
190
65
2.31
13.85
23.725
2.697
T P
1foc_A
128
190
62
2.38
25.81
23.648
2.502
T P
1ccr_A
111
190
62
2.16
20.97
23.601
2.742
T P
1rap_A
108
190
61
2.31
8.20
23.524
2.533
T P
1fhb_A
108
190
64
2.49
6.25
23.100
2.468
T P
1csu_A
108
190
61
2.35
8.20
23.077
2.490
T P
2aiu_A
104
190
63
2.52
17.46
22.672
2.402
T P
1a56_A
81
190
60
2.52
13.33
20.574
2.294
T P
1lms_A
95
190
48
2.62
8.33
17.006
1.763
T P
2occ_B
227
190
40
2.39
7.50
16.004
1.605
T P
1v54_B
227
190
46
2.85
8.70
15.806
1.562
T P
2gsm_B
256
190
39
2.93
7.69
13.745
1.286
T P
3ehb_B
252
190
36
2.90
5.56
12.770
1.199
T P
1qle_B
252
190
36
2.71
8.33
12.685
1.282
T P
1m56_B
260
190
34
2.67
2.94
11.772
1.227
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]