LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_320.5wLII_11276_9
Total number of 3D structures: 86
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1dp4_C
429
377
343
1.70
14.29
83.760
19.067
T P
1jdp_A
396
377
313
2.02
11.82
60.540
14.750
T P
1yk0_A
394
377
311
2.00
11.90
60.043
14.803
T P
1yk1_A
394
377
309
1.97
12.30
59.637
14.907
T P
1ewk_B
449
377
242
2.32
10.33
42.390
9.981
T P
2e4z_A
434
377
236
2.44
11.44
40.258
9.288
T P
2e4u_B
514
377
217
2.39
9.68
39.696
8.719
T P
2lbp_A
346
377
202
2.16
14.36
38.665
8.957
T P
2liv_A
344
377
198
2.12
13.64
38.598
8.929
T P
1pea_A
368
377
213
2.39
13.15
37.963
8.541
T P
1z15_A
344
377
195
2.25
12.82
37.581
8.306
T P
1usg_A
345
377
193
2.25
13.47
37.035
8.203
T P
1qnl_A
368
377
201
2.43
12.94
35.991
7.943
T P
3eaf_A
384
377
215
2.48
9.30
35.174
8.342
T P
2h4a_A
317
377
160
2.66
6.25
28.817
5.796
T P
3ckm_A
318
377
178
2.68
6.74
28.787
6.394
T P
1tjy_A
316
377
154
2.58
7.14
26.360
5.747
T P
3e3m_A
270
377
160
2.64
5.00
26.048
5.845
T P
2qvc_A
302
377
141
2.55
7.80
23.671
5.312
T P
3c6q_B
305
377
143
2.75
6.99
22.956
5.020
T P
2h3h_A
313
377
142
2.68
11.97
22.925
5.105
T P
2fn9_A
280
377
136
2.52
6.62
22.500
5.184
T P
1dbp_A
271
377
124
2.81
4.84
21.871
4.263
T P
3clk_B
262
377
128
2.74
7.81
21.270
4.503
T P
2fqx_A
316
377
129
2.72
9.30
20.881
4.581
T P
3eif_A
936
377
119
2.44
12.61
20.810
4.694
T P
1drk_A
271
377
123
2.58
6.50
20.771
4.587
T P
2dri_A
271
377
123
2.76
4.88
20.770
4.298
T P
2fn8_A
292
377
120
2.60
5.83
20.724
4.448
T P
2gx6_A
271
377
128
2.92
7.03
20.563
4.241
T P
1ba2_A
271
377
124
2.68
2.42
20.527
4.466
T P
1drj_A
271
377
120
2.60
3.33
20.494
4.439
T P
2ioy_A
274
377
115
2.58
9.57
19.601
4.289
T P
2qh8_A
296
377
117
2.65
8.55
19.375
4.260
T P
1g7w_A
396
377
113
2.48
10.62
19.061
4.375
T P
1rrv_A
401
377
105
2.53
7.62
18.910
3.996
T P
2q7w_A
378
377
107
2.40
11.21
18.811
4.283
T P
1asf_A
396
377
110
2.52
10.91
18.726
4.196
T P
2aat_A
396
377
104
2.40
11.54
18.710
4.161
T P
1ix8_A
396
377
111
2.46
11.71
18.534
4.340
T P
1g4v_A
396
377
106
2.35
10.38
18.225
4.325
T P
1ix6_A
396
377
112
2.51
7.14
18.220
4.295
T P
5eaa_A
396
377
108
2.46
9.26
18.182
4.213
T P
1spa_A
396
377
110
2.55
8.18
18.165
4.151
T P
2d64_A
396
377
105
2.45
10.48
18.005
4.120
T P
1ars_A
396
377
110
2.51
9.09
18.003
4.214
T P
1ahx_A
396
377
106
2.50
11.32
17.985
4.070
T P
1bqd_A
395
377
104
2.37
10.58
17.817
4.212
T P
1g7x_A
396
377
102
2.35
8.82
17.479
4.170
T P
2d66_A
396
377
97
2.38
9.28
17.399
3.913
T P
1itz_A
666
377
98
2.42
11.22
17.155
3.882
T P
1g4x_A
396
377
96
2.47
6.25
17.075
3.729
T P
3dm9_B
305
377
94
2.36
10.64
16.991
3.824
T P
3e70_C
307
377
94
2.39
9.57
16.848
3.771
T P
2d5y_A
396
377
97
2.52
10.31
16.783
3.703
T P
1wdw_B
385
377
98
2.52
5.10
16.565
3.744
T P
1v8z_B
387
377
97
2.49
4.12
16.495
3.751
T P
2d61_A
396
377
94
2.54
7.45
16.362
3.564
T P
1aia_A
396
377
97
2.86
8.25
16.061
3.273
T P
1toi_A
395
377
96
2.52
10.42
15.970
3.671
T P
1bqa_A
395
377
92
2.77
6.52
15.623
3.204
T P
1aam_A
396
377
94
2.58
13.83
15.578
3.502
T P
1tok_A
395
377
88
2.49
9.09
15.154
3.398
T P
1qir_A
396
377
92
2.75
7.61
15.144
3.226
T P
1tog_A
395
377
91
2.62
10.99
15.144
3.348
T P
1arh_A
396
377
90
2.81
7.78
15.104
3.098
T P
4enl_A
436
377
77
2.64
11.69
12.732
2.806
T P
2al2_B
430
377
71
2.69
8.45
12.402
2.543
T P
1gkr_A
450
377
75
2.76
9.33
12.125
2.627
T P
2al1_A
436
377
71
2.75
4.23
12.066
2.495
T P
1l8p_A
436
377
70
2.76
2.86
11.815
2.451
T P
1p48_A
436
377
68
2.67
4.41
11.712
2.453
T P
1p43_A
436
377
58
2.51
5.17
10.809
2.223
T P
2al2_A
436
377
62
2.93
9.68
10.630
2.043
T P
1c5g_A
379
377
59
2.53
5.08
10.412
2.244
T P
5prn_A
289
377
60
2.77
1.67
9.975
2.092
T P
2iwk_A
590
377
56
2.84
7.14
9.950
1.903
T P
3prn_A
289
377
59
2.76
8.47
9.903
2.062
T P
3cvm_A
377
377
51
2.60
3.92
9.686
1.891
T P
1dvm_A
375
377
53
2.68
11.32
9.338
1.906
T P
3dc0_A
422
377
51
2.62
3.92
9.306
1.874
T P
2vzs_A
857
377
52
2.79
7.69
9.212
1.801
T P
1lj5_A
379
377
49
2.62
6.12
8.847
1.803
T P
1db2_A
377
377
50
2.81
6.00
8.691
1.716
T P
1bh3_A
289
377
45
2.85
4.44
7.434
1.524
T P
2prn_A
289
377
41
2.84
4.88
7.126
1.393
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]