LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_323.5wLII_11276_25
Total number of 3D structures: 32
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1hr7_D
441
79
70
1.35
14.29
85.954
4.844
T P
1hr6_D
443
79
70
1.39
14.29
85.693
4.692
T P
1pp9_A
442
79
72
1.50
23.61
85.399
4.495
T P
1sqb_A
446
79
71
1.53
23.94
85.043
4.367
T P
1qcr_A
446
79
71
1.54
23.94
84.749
4.331
T P
1bcc_A
442
79
69
1.47
21.74
83.866
4.390
T P
3cwb_A
443
79
69
1.49
21.74
83.139
4.331
T P
1oyy_A
512
79
48
2.51
6.25
40.930
1.841
T P
1oyw_A
516
79
42
2.30
9.52
38.392
1.747
T P
1s2m_A
377
79
36
2.35
8.33
35.387
1.472
T P
2hyi_C
392
79
39
2.47
7.69
34.437
1.520
T P
2z0m_A
331
79
34
2.21
8.82
33.909
1.472
T P
2j0s_A
391
79
34
2.19
0.00
33.753
1.487
T P
2hxy_A
376
79
33
2.29
3.03
32.808
1.382
T P
1xti_A
381
79
37
2.46
0.00
32.455
1.444
T P
1t5i_A
159
79
36
2.51
0.00
32.101
1.382
T P
2zu6_C
351
79
34
2.66
5.88
32.024
1.233
T P
1xtk_A
382
79
35
2.61
2.86
31.664
1.294
T P
1fuk_A
157
79
34
2.34
8.82
31.456
1.392
T P
2rb4_A
164
79
33
2.33
9.09
30.803
1.357
T P
2vso_A
366
79
34
2.49
5.88
30.620
1.312
T P
2hjv_A
158
79
31
2.03
9.68
30.584
1.454
T P
3ews_A
416
79
32
2.31
9.38
30.271
1.330
T P
1fuu_B
380
79
33
2.57
6.06
30.183
1.235
T P
2i4i_A
408
79
31
2.31
3.23
30.063
1.287
T P
1hv8_A
363
79
37
2.78
13.51
29.643
1.284
T P
2g2j_A
158
79
34
2.42
8.82
29.386
1.350
T P
3fht_A
392
79
36
2.68
8.33
28.685
1.295
T P
2db3_A
420
79
34
2.73
8.82
27.357
1.201
T P
3g0h_A
408
79
32
2.86
6.25
26.515
1.079
T P
2p6n_A
160
79
30
2.89
0.00
25.579
1.005
T P
3eiq_D
371
79
27
2.83
3.70
21.974
0.920
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]