LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_33.5wLII_10822_4
Total number of 3D structures: 74
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2bh1_A
238
273
233
0.83
18.88
84.018
24.974
T P
1yf5_L
238
273
233
1.04
18.45
82.471
20.364
T P
1w97_L
229
273
224
1.16
18.75
78.763
17.838
T P
1dqw_A
267
273
68
2.50
2.94
16.262
2.619
T P
2f84_A
323
273
57
2.36
12.28
15.257
2.313
T P
1los_A
216
273
55
2.54
0.00
13.955
2.082
T P
1km4_A
212
273
54
2.51
0.00
13.922
2.072
T P
1km1_A
212
273
54
2.66
3.70
13.917
1.958
T P
1kly_A
212
273
50
2.42
2.00
13.260
1.985
T P
1lor_A
209
273
52
2.56
5.77
13.217
1.954
T P
1dv7_A
212
273
55
2.83
5.45
13.208
1.875
T P
1km5_A
212
273
50
2.68
2.00
13.129
1.798
T P
2yyu_B
229
273
51
2.59
11.76
13.077
1.893
T P
1km0_A
237
273
49
2.37
2.04
12.990
1.984
T P
1h1y_A
219
273
53
2.53
7.55
12.980
2.012
T P
2czd_B
207
273
53
2.79
5.66
12.859
1.832
T P
1km2_A
211
273
51
2.58
5.88
12.843
1.900
T P
2jgy_A
249
273
50
2.86
4.00
12.667
1.689
T P
1x1z_A
215
273
44
2.45
4.55
12.137
1.726
T P
1km3_A
212
273
47
2.50
2.13
12.071
1.807
T P
1ev1_1
281
273
50
2.80
18.00
11.841
1.727
T P
3g3m_A
257
273
45
2.60
4.44
11.616
1.667
T P
2qce_A
257
273
49
2.74
2.04
11.565
1.724
T P
2p1f_A
259
273
46
2.46
6.52
11.564
1.799
T P
2guu_A
317
273
49
2.78
6.12
11.542
1.702
T P
1km6_A
209
273
45
2.56
6.67
11.541
1.693
T P
1loq_A
209
273
43
2.37
6.98
11.486
1.744
T P
1d4m_1
284
273
47
2.55
8.51
11.482
1.772
T P
1rud_1
273
273
47
2.86
12.77
11.241
1.589
T P
3g3d_B
259
273
44
2.69
6.82
11.184
1.579
T P
1rui_1
273
273
47
2.86
12.77
11.059
1.587
T P
1eix_C
232
273
45
2.54
2.22
10.949
1.703
T P
3bk0_A
257
273
45
2.75
2.22
10.890
1.579
T P
1cov_1
269
273
45
2.74
24.44
10.847
1.585
T P
2ffc_A
318
273
42
2.59
2.38
10.762
1.561
T P
1dbt_A
237
273
42
2.70
7.14
10.731
1.499
T P
1lol_B
214
273
41
2.73
0.00
10.699
1.449
T P
3bgg_A
257
273
44
2.72
0.00
10.698
1.559
T P
1klz_A
209
273
43
2.48
0.00
10.691
1.664
T P
1tqj_C
218
273
42
2.67
2.38
10.585
1.517
T P
1jjk_A
231
273
39
2.73
5.13
10.499
1.378
T P
3bpw_A
330
273
41
2.53
4.88
10.299
1.558
T P
1z7z_1
214
273
44
2.66
2.27
10.205
1.592
T P
1tqx_A
221
273
38
2.49
5.26
10.139
1.464
T P
1dvj_A
239
273
39
2.62
2.56
10.111
1.432
T P
1pvc_1
279
273
38
2.64
2.63
9.923
1.386
T P
3epd_1
279
273
38
2.64
2.63
9.923
1.386
T P
1vbe_1
279
273
40
2.65
2.50
9.881
1.455
T P
1hxs_1
288
273
40
2.66
5.00
9.842
1.449
T P
1aym_1
285
273
36
2.65
5.56
9.779
1.310
T P
1rue_1
273
273
39
2.64
2.56
9.707
1.424
T P
1rpx_A
230
273
36
2.75
2.78
9.705
1.262
T P
1oop_A
271
273
38
2.59
2.63
9.695
1.411
T P
1mqt_A
271
273
37
2.51
5.41
9.654
1.420
T P
1ncq_A
273
273
41
2.91
7.32
9.451
1.362
T P
1al2_1
283
273
37
2.53
0.00
9.387
1.406
T P
1vbb_1
279
273
38
2.64
2.63
9.385
1.387
T P
1bev_1
268
273
42
2.79
4.76
9.377
1.453
T P
2qcf_A
257
273
41
2.85
12.20
9.294
1.389
T P
1pov_1
235
273
37
2.61
2.70
9.269
1.364
T P
1z7s_1
283
273
37
2.59
8.11
9.241
1.374
T P
1rug_1
273
273
34
2.62
8.82
8.832
1.249
T P
1fpn_1
269
273
34
2.57
11.76
8.663
1.275
T P
1ar7_1
283
273
37
2.72
10.81
8.562
1.312
T P
1r1a_1
283
273
33
2.81
15.15
8.337
1.133
T P
2rmu_1
273
273
31
2.68
12.90
7.991
1.114
T P
1h8t_A
289
273
28
2.76
3.57
7.578
0.980
T P
3epc_1
283
273
30
2.84
6.67
7.542
1.022
T P
1ar6_1
283
273
31
2.68
16.13
7.445
1.115
T P
1eah_1
272
273
26
3.03
3.85
7.107
0.831
T P
3epf_1
272
273
27
3.04
7.41
6.655
0.860
T P
1rhi_1
273
273
26
2.52
3.85
6.619
0.992
T P
1z8r_A
150
273
23
2.76
8.70
5.863
0.805
T P
1rmu_1
273
273
18
2.53
5.56
4.821
0.686
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]