LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_331.5wLII_11276_77
Total number of 3D structures: 88
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2yxe_A
214
180
175
0.73
17.71
96.294
20.979
T P
1jg1_A
215
180
174
1.28
13.22
91.910
12.591
T P
1i1n_A
224
180
168
1.49
11.31
86.252
10.536
T P
1dl5_A
317
180
168
1.58
14.88
85.931
9.995
T P
1r18_A
223
180
166
1.58
12.65
85.022
9.872
T P
1vbf_B
226
180
160
1.47
12.50
83.438
10.199
T P
2pbf_A
218
180
163
1.70
11.66
82.417
9.060
T P
1o54_A
265
180
120
1.79
7.50
60.425
6.336
T P
1i9g_A
264
180
119
1.78
14.29
60.028
6.317
T P
2b25_A
254
180
119
1.86
10.08
59.631
6.079
T P
2pwy_A
251
180
119
1.86
12.61
58.963
6.058
T P
1l3i_A
186
180
119
1.94
9.24
58.661
5.822
T P
3bus_A
251
180
111
1.84
13.51
56.405
5.728
T P
2yvl_A
247
180
120
2.04
5.83
56.234
5.614
T P
1t43_A
274
180
117
2.10
10.26
54.833
5.322
T P
3e7p_A
253
180
112
1.94
8.93
54.654
5.504
T P
3duw_A
220
180
118
1.96
12.71
54.272
5.735
T P
2bh2_A
418
180
108
1.79
12.04
54.159
5.718
T P
1xxl_A
234
180
104
1.72
8.65
54.154
5.701
T P
1kph_B
285
180
106
1.80
11.32
54.008
5.591
T P
2b3t_A
276
180
113
2.03
8.85
53.992
5.306
T P
2h1r_B
275
180
109
1.92
11.01
53.776
5.390
T P
1tpy_A
285
180
109
1.96
12.84
53.453
5.298
T P
3dh0_B
190
180
108
1.98
10.19
53.248
5.185
T P
1kpg_A
285
180
107
1.86
12.15
53.092
5.465
T P
1kpi_A
291
180
109
1.92
11.01
52.907
5.408
T P
1uwv_A
417
180
112
2.04
13.39
52.609
5.227
T P
1sqg_A
424
180
114
2.12
9.65
52.484
5.131
T P
3ccf_B
242
180
101
1.66
6.93
52.417
5.728
T P
1l1e_A
272
180
107
1.96
12.15
52.352
5.201
T P
2fk8_A
281
180
107
1.95
12.15
51.987
5.223
T P
2yxd_A
180
180
114
2.16
3.51
51.711
5.046
T P
3d2l_C
242
180
105
1.98
11.43
51.570
5.056
T P
1ve3_B
226
180
108
1.98
9.26
51.535
5.193
T P
1zq9_A
278
180
106
1.91
16.04
51.029
5.271
T P
1p91_A
268
180
102
1.86
11.76
50.988
5.203
T P
3cjt_A
254
180
113
2.09
11.50
50.910
5.161
T P
3bkw_A
219
180
101
1.87
7.92
50.614
5.132
T P
2nxc_A
249
180
113
2.15
12.39
50.419
5.022
T P
3dtn_A
220
180
110
2.17
8.18
50.041
4.851
T P
1dus_A
194
180
113
2.12
10.62
49.816
5.091
T P
1vl5_A
231
180
103
1.96
6.80
49.383
4.996
T P
3dmg_A
371
180
106
2.01
16.04
48.955
5.017
T P
2gs9_A
211
180
105
2.03
11.43
48.478
4.927
T P
2pxx_A
213
180
101
2.06
13.86
48.151
4.673
T P
1wzn_A
244
180
101
1.95
6.93
48.072
4.923
T P
3e23_A
198
180
97
1.88
7.22
47.142
4.896
T P
1nkv_C
249
180
106
2.04
9.43
44.271
4.945
T P
1r74_B
279
180
104
2.13
7.69
43.893
4.659
T P
1d2g_A
292
180
104
2.15
8.65
43.838
4.617
T P
1r8x_B
284
180
105
2.15
8.57
43.713
4.665
T P
1xva_A
292
180
105
2.11
5.71
43.499
4.748
T P
2avn_A
247
180
102
2.00
16.67
43.278
4.867
T P
2azt_B
277
180
103
2.13
5.83
43.001
4.621
T P
2yqz_A
261
180
99
2.31
11.11
42.728
4.101
T P
3cc8_A
211
180
95
2.13
9.47
39.410
4.267
T P
1w25_A
454
180
63
2.29
11.11
26.196
2.636
T P
1xhf_B
122
180
58
2.34
5.17
24.830
2.375
T P
2ftk_E
119
180
65
2.57
10.77
24.786
2.439
T P
1kgs_A
219
180
61
2.50
4.92
23.150
2.345
T P
2jba_A
125
180
59
2.41
10.17
23.058
2.348
T P
2oqr_A
226
180
60
2.36
10.00
23.001
2.437
T P
1zh2_A
120
180
59
2.39
16.95
22.985
2.370
T P
1f51_E
119
180
60
2.37
5.00
22.893
2.431
T P
1zes_A
121
180
58
2.34
8.62
22.748
2.374
T P
1nat_A
119
180
59
2.41
6.78
22.705
2.351
T P
1xhe_B
122
180
56
2.20
7.14
22.647
2.434
T P
2jvi_A
132
180
62
2.60
8.06
22.524
2.294
T P
2j8e_A
128
180
56
2.29
7.14
22.480
2.341
T P
1srr_C
121
180
57
2.19
3.51
22.457
2.490
T P
2fka_A
128
180
57
2.28
8.77
22.420
2.395
T P
3c3m_A
123
180
59
2.39
10.17
22.161
2.370
T P
2a9r_A
117
180
56
2.41
8.93
22.030
2.232
T P
2a9o_A
117
180
56
2.33
8.93
22.002
2.308
T P
2jba_B
121
180
57
2.37
8.77
21.876
2.311
T P
2chy_A
128
180
59
2.50
10.17
21.765
2.269
T P
2jvk_A
132
180
56
2.44
8.93
21.750
2.208
T P
1b00_A
122
180
53
2.34
9.43
21.617
2.170
T P
1zgz_A
121
180
56
2.26
12.50
21.537
2.377
T P
1ab5_A
125
180
59
2.57
6.78
21.467
2.210
T P
2che_A
128
180
60
2.58
6.67
21.290
2.243
T P
2iyn_B
124
180
56
2.42
7.14
21.209
2.219
T P
1mvo_A
121
180
56
2.37
8.93
20.975
2.263
T P
2jb9_B
122
180
58
2.53
10.34
20.849
2.208
T P
2gwr_A
225
180
53
2.49
9.43
20.697
2.045
T P
1ab6_A
125
180
55
2.56
3.64
20.159
2.071
T P
2jvj_A
132
180
53
2.51
7.55
19.266
2.030
T P
1ys7_B
226
180
44
2.97
11.36
15.837
1.431
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]