LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_332.5wLII_11276_84
Total number of 3D structures: 52
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2i09_B |
381 |
395 |
357 |
0.92 |
16.81 |
88.578 |
35.016 |
T P |
1o98_A |
509 |
395 |
221 |
2.14 |
15.84 |
39.736 |
9.872 |
T P |
1o99_A |
509 |
395 |
224 |
2.10 |
14.73 |
39.582 |
10.160 |
T P |
1fsu_A |
474 |
395 |
209 |
2.04 |
12.44 |
39.184 |
9.748 |
T P |
2ify_A |
508 |
395 |
210 |
2.09 |
17.14 |
37.342 |
9.592 |
T P |
1p49_A |
548 |
395 |
206 |
2.11 |
11.17 |
37.235 |
9.321 |
T P |
2gso_A |
382 |
395 |
208 |
2.14 |
12.98 |
35.544 |
9.270 |
T P |
2vqr_A |
511 |
395 |
208 |
2.12 |
12.50 |
35.194 |
9.376 |
T P |
1e33_P |
480 |
395 |
207 |
2.17 |
12.08 |
35.043 |
9.123 |
T P |
1e3c_P |
481 |
395 |
210 |
2.15 |
11.43 |
35.008 |
9.334 |
T P |
1e1z_P |
481 |
395 |
209 |
2.11 |
12.92 |
35.006 |
9.464 |
T P |
1e2s_P |
481 |
395 |
207 |
2.10 |
13.04 |
34.758 |
9.413 |
T P |
3ed4_B |
474 |
395 |
208 |
2.25 |
12.50 |
34.247 |
8.842 |
T P |
3b5q_B |
467 |
395 |
207 |
2.28 |
12.08 |
33.992 |
8.695 |
T P |
1hdh_A |
524 |
395 |
202 |
2.24 |
13.86 |
33.856 |
8.643 |
T P |
1auk_A |
480 |
395 |
207 |
2.19 |
12.56 |
33.831 |
9.036 |
T P |
2qzu_A |
465 |
395 |
198 |
2.12 |
10.10 |
33.578 |
8.933 |
T P |
2w5q_A |
424 |
395 |
195 |
2.13 |
8.21 |
33.510 |
8.732 |
T P |
1ew2_A |
479 |
395 |
180 |
2.06 |
13.89 |
33.311 |
8.349 |
T P |
1y7a_A |
449 |
395 |
186 |
2.15 |
11.29 |
33.074 |
8.263 |
T P |
2g9y_A |
449 |
395 |
188 |
2.19 |
11.17 |
32.924 |
8.210 |
T P |
1elx_A |
449 |
395 |
184 |
2.15 |
11.96 |
32.915 |
8.167 |
T P |
3dyc_A |
446 |
395 |
182 |
2.06 |
11.54 |
32.858 |
8.424 |
T P |
1kh7_A |
444 |
395 |
184 |
2.16 |
11.96 |
32.827 |
8.142 |
T P |
1b8j_A |
448 |
395 |
183 |
2.13 |
12.02 |
32.809 |
8.207 |
T P |
1elz_A |
449 |
395 |
189 |
2.22 |
10.58 |
32.778 |
8.146 |
T P |
1anh_A |
449 |
395 |
189 |
2.23 |
10.58 |
32.703 |
8.095 |
T P |
1hqa_A |
446 |
395 |
185 |
2.15 |
11.35 |
32.458 |
8.212 |
T P |
1zed_A |
481 |
395 |
178 |
2.11 |
14.04 |
32.420 |
8.062 |
T P |
1alk_A |
449 |
395 |
177 |
2.08 |
11.30 |
32.295 |
8.127 |
T P |
1anj_A |
446 |
395 |
177 |
2.08 |
11.30 |
32.202 |
8.114 |
T P |
2w5r_A |
424 |
395 |
189 |
2.16 |
8.47 |
32.197 |
8.363 |
T P |
1kh5_A |
444 |
395 |
179 |
2.11 |
11.17 |
32.172 |
8.092 |
T P |
3cmr_A |
445 |
395 |
175 |
2.07 |
12.00 |
31.672 |
8.065 |
T P |
1y6v_A |
449 |
395 |
175 |
2.06 |
12.57 |
31.367 |
8.100 |
T P |
1hjk_A |
449 |
395 |
181 |
2.12 |
10.50 |
31.322 |
8.145 |
T P |
1shq_A |
476 |
395 |
173 |
2.04 |
12.72 |
30.973 |
8.086 |
T P |
2anh_A |
446 |
395 |
175 |
2.13 |
12.00 |
30.865 |
7.832 |
T P |
2iuc_B |
342 |
395 |
168 |
2.12 |
16.07 |
30.700 |
7.582 |
T P |
1ajb_A |
449 |
395 |
169 |
2.12 |
10.65 |
30.477 |
7.602 |
T P |
1ura_A |
446 |
395 |
167 |
2.08 |
9.58 |
30.477 |
7.649 |
T P |
1ani_A |
446 |
395 |
169 |
2.14 |
11.83 |
30.476 |
7.531 |
T P |
1ali_A |
446 |
395 |
169 |
2.13 |
10.06 |
30.425 |
7.569 |
T P |
1khj_A |
444 |
395 |
169 |
2.13 |
11.24 |
30.382 |
7.595 |
T P |
3bdh_A |
449 |
395 |
174 |
2.16 |
10.34 |
30.333 |
7.694 |
T P |
2w8d_B |
421 |
395 |
183 |
2.35 |
11.48 |
30.316 |
7.458 |
T P |
1alh_A |
446 |
395 |
170 |
2.13 |
10.59 |
30.296 |
7.627 |
T P |
1ely_A |
449 |
395 |
167 |
2.13 |
10.78 |
30.206 |
7.487 |
T P |
3bdf_A |
434 |
395 |
168 |
2.05 |
10.12 |
29.904 |
7.798 |
T P |
2iuc_A |
340 |
395 |
164 |
2.05 |
15.85 |
29.590 |
7.621 |
T P |
1k7h_A |
476 |
395 |
165 |
2.10 |
12.73 |
29.452 |
7.509 |
T P |
3bdg_B |
433 |
395 |
161 |
2.12 |
11.18 |
28.320 |
7.244 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]