LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_333.5wLII_11276_87
Total number of 3D structures: 59
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3bjf_A
518
188
184
1.05
17.93
95.705
16.046
T P
1t5a_A
519
188
183
1.02
18.03
95.416
16.402
T P
1pkm_A
519
188
183
1.17
18.03
94.448
14.393
T P
3g2g_C
510
188
182
1.11
18.13
94.424
15.034
T P
1f3w_A
519
188
184
1.25
17.93
94.060
13.637
T P
3bjt_A
512
188
183
1.17
18.03
93.988
14.355
T P
1lix_A
517
188
184
1.27
15.22
93.752
13.456
T P
1liy_C
514
188
182
1.23
15.38
93.162
13.652
T P
1f3x_A
519
188
183
1.28
18.03
93.076
13.249
T P
2g50_D
521
188
183
1.33
18.03
92.374
12.837
T P
1pkn_A
514
188
181
1.28
17.13
91.919
13.119
T P
1liu_A
517
188
184
1.46
15.22
91.758
11.824
T P
1liw_A
517
188
184
1.51
15.22
90.936
11.431
T P
1a3w_A
492
188
183
1.60
15.30
90.073
10.746
T P
1a49_A
519
188
180
1.88
17.78
82.168
9.081
T P
1zjh_A
507
188
172
2.07
15.70
75.959
7.927
T P
1pkl_G
498
188
172
2.18
12.21
74.138
7.531
T P
1pky_A
464
188
174
2.31
13.22
73.988
7.232
T P
1e0u_A
461
188
174
2.30
13.79
73.325
7.248
T P
3e0w_A
485
188
173
1.88
12.72
72.180
8.724
T P
2e28_A
587
188
164
2.03
14.02
68.973
7.694
T P
1e0t_A
446
188
159
2.20
11.95
64.880
6.909
T P
3eoe_B
483
188
171
2.32
14.04
64.755
7.073
T P
2g4r_A
153
188
62
2.31
11.29
24.426
2.569
T P
2g2c_A
152
188
60
2.18
6.67
24.283
2.634
T P
1di6_A
183
188
59
2.27
10.17
23.671
2.489
T P
2pjk_A
166
188
65
2.47
9.23
23.527
2.531
T P
1t3e_A
412
188
64
2.39
9.38
23.467
2.573
T P
1uz5_A
391
188
64
2.41
6.25
23.360
2.548
T P
1fc5_A
404
188
63
2.39
4.76
23.244
2.530
T P
2nqv_A
405
188
66
2.66
4.55
23.208
2.395
T P
1g8l_A
403
188
63
2.49
3.17
23.190
2.436
T P
2fts_A
419
188
64
2.34
7.81
23.121
2.627
T P
2nqq_A
403
188
62
2.47
6.45
23.091
2.416
T P
2nqk_A
403
188
61
2.37
4.92
23.064
2.470
T P
2nqm_B
403
188
63
2.46
6.35
23.027
2.463
T P
2is8_B
161
188
64
2.58
9.38
22.952
2.385
T P
2nrp_B
405
188
62
2.26
4.84
22.947
2.625
T P
2f7w_A
173
188
61
2.28
8.20
22.930
2.568
T P
2nqu_B
404
188
63
2.48
4.76
22.880
2.441
T P
1jlj_A
169
188
61
2.33
6.56
22.839
2.509
T P
1eav_A
160
188
59
2.28
8.47
22.787
2.476
T P
2nqs_A
403
188
63
2.37
4.76
22.720
2.555
T P
2nro_A
403
188
61
2.31
6.56
22.694
2.534
T P
1ihc_A
169
188
60
2.31
6.67
22.670
2.489
T P
2nqn_A
405
188
61
2.35
3.28
22.614
2.493
T P
2pbq_A
174
188
58
2.14
6.90
22.584
2.584
T P
1o8n_A
162
188
60
2.37
8.33
22.465
2.429
T P
1uuy_A
161
188
60
2.35
6.67
22.457
2.454
T P
1uux_A
161
188
60
2.34
6.67
22.457
2.457
T P
1mkz_B
171
188
53
2.13
3.77
22.413
2.374
T P
2nqr_A
404
188
62
2.33
4.84
22.326
2.546
T P
1o8q_A
159
188
57
2.27
7.02
22.303
2.403
T P
1o8o_B
163
188
58
2.35
8.62
22.273
2.370
T P
2nrs_A
403
188
60
2.35
5.00
21.836
2.453
T P
1wu2_A
383
188
55
2.37
5.45
21.350
2.228
T P
1y5e_C
161
188
61
2.53
6.56
20.957
2.318
T P
1r2k_B
168
188
55
2.29
3.64
20.504
2.301
T P
3bfj_A
382
188
37
2.36
2.70
14.605
1.507
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]