LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_35.5wLII_10822_10
Total number of 3D structures: 63
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2z9i_A
284
308
273
0.67
16.48
87.832
35.386
T P
3cs0_A
392
308
245
2.05
10.61
68.821
11.399
T P
1soz_A
281
308
187
1.47
10.16
58.656
11.920
T P
1ky9_B
396
308
188
1.87
10.64
55.687
9.522
T P
1l1j_A
226
308
177
1.58
9.60
54.745
10.532
T P
2qf3_A
200
308
173
1.21
9.83
54.093
13.159
T P
2rce_C
213
308
170
1.20
10.00
54.004
13.070
T P
2qf0_B
211
308
172
1.39
9.88
53.937
11.570
T P
1sot_B
294
308
183
1.82
8.74
53.520
9.550
T P
2r3u_A
202
308
170
1.33
10.00
52.781
11.924
T P
1te0_A
318
308
180
1.77
9.44
52.040
9.606
T P
1lcy_A
296
308
165
1.48
10.91
50.834
10.444
T P
3b8j_A
184
308
162
1.54
11.11
49.509
9.904
T P
2qgr_A
169
308
154
1.36
11.04
47.558
10.546
T P
2o8l_A
216
308
155
1.73
7.10
46.567
8.454
T P
1agj_A
242
308
154
1.71
8.44
46.239
8.494
T P
1wcz_A
215
308
153
1.70
8.50
46.236
8.497
T P
1due_A
242
308
154
1.73
8.44
46.128
8.397
T P
2as9_A
207
308
150
1.69
9.33
45.550
8.377
T P
1qtf_A
246
308
146
1.78
5.48
43.586
7.762
T P
1dt2_A
245
308
145
1.79
6.21
43.262
7.676
T P
2w5e_A
162
308
146
1.86
6.16
42.723
7.450
T P
2p3w_A
110
308
86
1.56
18.60
26.202
5.186
T P
2ytw_A
118
308
85
1.73
16.47
25.504
4.652
T P
2pzd_A
106
308
82
1.60
23.17
24.973
4.827
T P
1fc9_A
386
308
89
1.95
19.10
24.157
4.340
T P
2qbw_A
189
308
81
1.98
22.22
23.532
3.892
T P
2joa_A
105
308
85
2.09
17.65
23.292
3.874
T P
1fc6_A
386
308
86
2.27
19.77
21.355
3.623
T P
2d90_A
102
308
70
1.82
20.00
20.568
3.638
T P
1ihj_B
95
308
70
1.82
18.57
20.476
3.648
T P
2zpm_A
86
308
67
1.48
22.39
20.400
4.238
T P
1g9o_A
91
308
67
1.72
20.90
20.371
3.676
T P
1gq4_A
90
308
70
1.89
18.57
20.258
3.526
T P
1x5n_A
114
308
67
1.70
26.87
20.202
3.732
T P
1gq5_A
91
308
68
1.85
19.12
20.100
3.494
T P
2f5y_A
82
308
67
1.64
13.43
19.926
3.842
T P
1i92_A
91
308
67
1.79
19.40
19.855
3.545
T P
1be9_A
115
308
68
2.05
22.06
19.775
3.167
T P
3dj3_B
101
308
73
1.94
20.55
19.767
3.580
T P
2vz5_A
111
308
71
1.82
19.72
19.714
3.703
T P
1tp5_A
115
308
67
2.00
22.39
19.704
3.186
T P
2hga_A
103
308
66
1.83
31.82
19.656
3.426
T P
1x5q_A
110
308
72
2.02
18.06
19.550
3.395
T P
3dj1_A
115
308
73
2.01
20.55
19.452
3.460
T P
2v90_A
95
308
66
1.84
19.70
19.435
3.405
T P
2ocs_A
85
308
65
1.77
15.38
19.418
3.483
T P
2he2_A
102
308
67
1.94
22.39
19.385
3.279
T P
2ozf_A
92
308
68
2.03
20.59
19.355
3.199
T P
2w4f_A
95
308
70
2.02
18.57
19.134
3.300
T P
2he4_A
90
308
67
1.92
16.42
19.133
3.321
T P
1um7_A
113
308
66
1.86
24.24
19.117
3.361
T P
2fcf_A
89
308
65
1.81
20.00
19.010
3.396
T P
2dls_A
93
308
64
1.80
20.31
18.871
3.366
T P
2pkt_A
91
308
67
1.88
17.91
18.825
3.376
T P
2iwq_A
92
308
65
1.88
18.46
18.401
3.279
T P
2vsp_A
83
308
65
1.90
18.46
18.192
3.256
T P
2i6v_A
87
308
67
1.88
17.91
17.998
3.390
T P
2z17_A
94
308
64
1.70
21.88
17.945
3.556
T P
2yuy_A
126
308
70
2.33
15.71
17.879
2.881
T P
2edz_A
114
308
68
2.10
19.12
17.814
3.095
T P
2omj_A
89
308
60
1.79
18.33
16.696
3.181
T P
2i4s_A
105
308
67
1.86
17.91
16.356
3.413
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]