LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_353.5wLII_11276_183
Total number of 3D structures: 55
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2fiy_A
285
285
253
0.73
17.39
87.930
30.527
T P
1jxh_A
248
285
66
2.74
6.06
14.457
2.328
T P
1h3n_A
814
285
52
2.38
9.62
13.240
2.096
T P
2v0c_A
810
285
44
2.15
6.82
12.457
1.956
T P
1jhf_A
197
285
44
2.69
13.64
11.029
1.579
T P
1qyp_A
57
285
38
2.08
18.42
10.857
1.742
T P
1x6h_A
86
285
45
2.52
2.22
10.609
1.716
T P
2gli_A
155
285
46
2.97
4.35
10.066
1.500
T P
1jhh_A
197
285
41
2.40
9.76
9.530
1.638
T P
2i13_A
151
285
40
2.79
2.50
9.230
1.385
T P
1p47_A
87
285
35
2.30
0.00
9.100
1.461
T P
1mey_F
84
285
40
2.91
5.00
8.935
1.329
T P
1a1i_A
85
285
36
2.67
2.78
8.879
1.299
T P
2csh_A
110
285
35
2.73
5.71
8.787
1.236
T P
1g2f_C
89
285
39
2.56
10.26
8.661
1.464
T P
1a1g_A
84
285
33
2.32
0.00
8.635
1.363
T P
2eol_A
42
285
29
2.05
3.45
8.580
1.351
T P
1f2i_G
66
285
30
2.23
0.00
8.551
1.288
T P
1tf6_D
182
285
36
2.57
5.56
8.549
1.350
T P
1jk2_A
85
285
36
2.42
11.11
8.522
1.427
T P
1aay_A
85
285
32
2.06
3.12
8.477
1.484
T P
1tf3_A
92
285
37
2.73
2.70
8.436
1.308
T P
1a1h_A
85
285
31
1.92
0.00
8.423
1.537
T P
1llm_C
87
285
33
2.35
9.09
8.403
1.348
T P
2eok_A
42
285
29
2.17
3.45
8.395
1.277
T P
2prt_A
115
285
36
2.73
8.33
8.390
1.271
T P
2ee8_A
106
285
30
2.13
3.33
8.340
1.345
T P
2yrj_A
46
285
29
2.11
0.00
8.335
1.310
T P
2dmd_A
96
285
36
2.50
8.33
8.272
1.387
T P
2en0_A
42
285
31
2.51
6.45
8.232
1.187
T P
1g2d_C
89
285
30
2.43
0.00
8.136
1.188
T P
1zaa_C
85
285
31
2.36
0.00
8.122
1.258
T P
2yt9_A
95
285
28
2.26
0.00
7.897
1.185
T P
1ubd_C
114
285
33
3.03
9.09
7.887
1.055
T P
2dlq_A
124
285
34
2.79
5.88
7.648
1.176
T P
2eoe_A
46
285
32
2.36
12.50
7.633
1.300
T P
2enf_A
46
285
29
2.30
3.45
7.628
1.210
T P
2em1_A
44
285
28
2.09
3.57
7.608
1.280
T P
2ytr_A
46
285
30
2.56
0.00
7.338
1.127
T P
2ebt_A
100
285
31
2.74
3.23
7.296
1.090
T P
2en6_A
46
285
29
2.49
6.90
7.202
1.121
T P
2ytk_A
46
285
29
2.51
6.90
6.710
1.110
T P
2ysv_A
42
285
25
2.27
8.00
6.683
1.053
T P
1x6e_A
72
285
29
2.60
0.00
6.626
1.072
T P
2eog_A
44
285
28
2.45
3.57
6.524
1.099
T P
2ene_A
46
285
24
2.21
0.00
6.487
1.041
T P
2cot_A
77
285
29
2.80
0.00
6.385
1.000
T P
2ep0_A
46
285
25
2.57
4.00
5.983
0.938
T P
2emv_A
44
285
24
2.61
8.33
5.970
0.886
T P
2yts_A
46
285
25
2.59
20.00
5.710
0.929
T P
2eqw_A
42
285
24
2.84
4.17
5.704
0.816
T P
2emk_A
46
285
23
2.76
13.04
5.634
0.805
T P
2emw_A
44
285
24
2.66
8.33
5.592
0.869
T P
2en4_A
46
285
21
2.68
0.00
5.168
0.756
T P
2ema_A
46
285
20
2.76
0.00
4.583
0.700
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]