LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_357.5wLII_11277_4
Total number of 3D structures: 64
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2vuo_A
215
134
110
1.80
17.27
74.669
5.794
T P
2dtq_A
211
134
106
1.61
14.15
73.769
6.208
T P
1iix_B
213
134
107
1.77
14.02
73.620
5.728
T P
1e4k_A
216
134
106
1.68
14.15
73.138
5.949
T P
1hzh_H
457
134
108
1.90
14.81
72.759
5.400
T P
1t83_B
212
134
105
1.73
14.29
72.642
5.735
T P
1iis_B
212
134
105
1.74
14.29
72.520
5.697
T P
3c2s_A
210
134
102
1.63
13.73
72.051
5.893
T P
2j6e_A
209
134
102
1.61
13.73
71.364
5.968
T P
1l6x_A
207
134
101
1.61
13.86
71.350
5.895
T P
2gj7_A
207
134
101
1.53
13.86
70.933
6.179
T P
1dn2_A
207
134
101
1.53
13.86
70.933
6.180
T P
1h3t_A
207
134
101
1.59
13.86
70.547
5.989
T P
2wah_B
209
134
101
1.67
13.86
70.450
5.694
T P
2ql1_A
209
134
103
1.71
13.59
70.190
5.699
T P
1igt_B
444
134
99
1.53
15.15
70.078
6.084
T P
2rgs_B
207
134
97
1.47
14.43
69.576
6.192
T P
1oqo_A
208
134
102
1.69
13.73
69.414
5.699
T P
1fc2_D
206
134
100
1.66
14.00
68.986
5.670
T P
1mco_H
428
134
95
1.54
13.68
68.047
5.775
T P
1fcc_A
206
134
99
1.77
14.14
67.694
5.283
T P
3dj9_A
107
134
96
1.44
13.54
67.416
6.223
T P
2vol_A
207
134
96
1.57
12.50
67.198
5.762
T P
1frt_C
205
134
95
1.56
14.74
67.115
5.730
T P
1ls0_B
320
134
97
1.83
21.65
67.032
5.031
T P
1i1a_C
205
134
97
1.82
14.43
66.062
5.052
T P
1igy_B
434
134
101
2.04
12.87
65.996
4.729
T P
1i1c_A
205
134
97
1.98
13.40
64.175
4.661
T P
1ow0_A
209
134
89
1.66
14.61
61.336
5.067
T P
1adq_A
206
134
95
1.69
13.68
58.397
5.313
T P
1fp5_A
208
134
91
1.83
21.98
57.714
4.723
T P
2ig2_H
238
134
87
1.99
12.64
57.191
4.156
T P
2qej_A
211
134
90
1.98
8.89
51.002
4.327
T P
2dsb_A
206
134
54
2.42
3.70
28.589
2.145
T P
2dsc_A
195
134
54
2.44
3.70
28.273
2.123
T P
1ihu_A
540
134
50
2.60
8.00
26.031
1.851
T P
3bm4_A
197
134
47
2.43
6.38
25.548
1.859
T P
1viq_A
204
134
45
2.51
8.89
24.110
1.723
T P
1mk1_A
187
134
41
2.45
2.44
23.306
1.608
T P
1g20_H
262
134
45
2.79
4.44
22.778
1.558
T P
2ved_B
254
134
43
2.83
9.30
22.542
1.467
T P
1vhz_A
186
134
40
2.45
2.50
22.297
1.568
T P
1viu_B
181
134
42
2.58
0.00
21.923
1.565
T P
3end_A
268
134
40
2.58
7.50
21.689
1.494
T P
1vhg_A
185
134
42
2.58
2.38
21.438
1.570
T P
1wcv_1
243
134
39
2.51
5.13
21.298
1.497
T P
2oze_A
284
134
38
2.41
7.89
20.941
1.512
T P
2afh_E
289
134
39
2.49
12.82
20.936
1.505
T P
2ph1_A
247
134
41
2.90
7.32
20.934
1.369
T P
1xd8_A
289
134
37
2.76
10.81
20.906
1.296
T P
2yvu_A
179
134
39
2.28
2.56
20.740
1.641
T P
3bfv_A
241
134
39
2.48
10.26
20.721
1.510
T P
3cwq_A
206
134
38
2.20
5.26
20.675
1.655
T P
2bek_A
244
134
37
2.42
5.41
20.550
1.466
T P
1rw4_A
271
134
43
2.61
11.63
20.524
1.586
T P
2c8v_A
271
134
39
2.61
10.26
20.503
1.438
T P
1g3q_A
237
134
37
2.57
2.70
20.423
1.388
T P
1xdb_A
289
134
36
2.80
2.78
20.053
1.240
T P
2dpo_A
310
134
39
2.69
5.13
19.871
1.400
T P
1g0s_B
202
134
39
2.91
7.69
19.620
1.294
T P
1de0_A
289
134
40
2.74
0.00
19.115
1.406
T P
1ion_A
243
134
37
3.08
5.41
18.326
1.165
T P
1hyq_A
232
134
32
2.68
9.38
15.792
1.149
T P
2yvp_A
182
134
17
2.07
0.00
10.472
0.784
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]