LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_362.5wLII_11277_20
Total number of 3D structures: 68
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1wd5_A
208
206
201
0.41
38.31
97.473
39.097
T P
2e55_A
208
206
126
1.81
21.43
55.370
6.605
T P
1i5e_A
208
206
132
1.96
17.42
55.032
6.398
T P
1o5o_A
210
206
122
1.84
19.67
52.984
6.301
T P
1zn8_B
179
206
119
1.78
23.53
52.957
6.326
T P
2ehj_A
208
206
124
1.91
16.13
52.589
6.171
T P
1l1q_A
181
206
120
1.94
15.83
52.241
5.896
T P
2dy0_A
182
206
120
1.88
23.33
52.027
6.046
T P
1dku_A
295
206
116
1.89
18.97
50.677
5.843
T P
1u9y_A
274
206
113
1.77
21.24
50.502
6.027
T P
2fxv_A
190
206
118
1.95
16.10
50.355
5.764
T P
1y0b_D
194
206
120
1.97
15.00
49.338
5.803
T P
3dmp_A
214
206
127
1.94
16.54
48.105
6.211
T P
1v9s_B
208
206
123
1.93
15.45
47.899
6.069
T P
2ji4_A
302
206
112
1.92
16.07
47.792
5.556
T P
2aee_A
206
206
119
2.02
21.01
47.584
5.606
T P
1j7j_B
164
206
120
2.14
16.67
47.548
5.367
T P
1mzv_A
216
206
117
2.08
20.51
47.492
5.373
T P
1qb7_A
236
206
118
2.15
17.80
47.361
5.248
T P
1g9s_A
169
206
117
2.05
17.09
47.274
5.444
T P
1pzm_A
170
206
112
1.91
15.18
47.132
5.583
T P
2c4k_A
305
206
116
2.12
13.79
47.043
5.229
T P
1g2q_A
178
206
109
1.83
19.27
45.654
5.640
T P
1w30_B
177
206
120
2.10
20.83
45.310
5.445
T P
1vdm_G
152
206
119
1.95
24.37
44.896
5.798
T P
2h08_B
308
206
112
2.03
16.96
44.857
5.270
T P
1vch_D
173
206
112
1.89
18.75
44.696
5.627
T P
2h06_B
308
206
115
2.15
17.39
44.578
5.100
T P
2ywu_A
164
206
115
2.12
14.78
44.477
5.190
T P
1hgx_A
164
206
115
2.22
15.65
43.848
4.953
T P
1yfz_A
178
206
123
2.26
17.07
43.665
5.212
T P
1o57_A
270
206
111
2.02
19.82
43.653
5.226
T P
2p1z_B
168
206
116
2.05
24.14
43.575
5.394
T P
2igb_B
173
206
117
2.02
23.08
43.419
5.512
T P
2h07_B
308
206
110
1.99
18.18
43.159
5.262
T P
1a3c_A
166
206
116
2.01
23.28
43.130
5.507
T P
3dah_C
300
206
110
2.18
18.18
43.060
4.831
T P
1tc2_B
196
206
118
2.29
14.41
42.706
4.931
T P
1ufr_A
167
206
117
2.06
28.21
42.705
5.425
T P
2vfa_B
205
206
115
2.17
16.52
42.491
5.064
T P
1gph_1
465
206
112
1.87
25.89
42.445
5.691
T P
1p18_B
194
206
118
2.27
15.25
42.399
4.969
T P
1tc1_B
186
206
118
2.12
16.10
42.295
5.321
T P
1i0i_B
194
206
112
2.11
15.18
42.075
5.066
T P
2geb_A
184
206
114
2.19
15.79
41.956
4.977
T P
2jbh_B
213
206
118
2.25
22.03
41.945
5.011
T P
1i13_B
193
206
112
2.04
15.18
41.907
5.237
T P
1i0l_B
194
206
110
1.93
13.64
41.903
5.425
T P
1i14_B
194
206
112
2.09
15.18
41.689
5.125
T P
2ps1_A
224
206
112
2.04
16.07
41.593
5.240
T P
1ecf_B
500
206
111
2.03
21.62
41.510
5.208
T P
1p4a_A
269
206
113
2.06
18.58
41.281
5.232
T P
2yzk_A
177
206
113
2.02
23.01
40.902
5.324
T P
1dbr_A
227
206
111
2.27
18.92
40.769
4.679
T P
1qk5_B
217
206
111
2.15
18.92
40.617
4.926
T P
1fsg_A
233
206
109
2.11
18.35
40.535
4.934
T P
1d6n_A
214
206
109
2.17
20.18
40.392
4.808
T P
1a98_A
129
206
99
2.01
17.17
40.378
4.684
T P
1cjb_C
230
206
114
2.29
15.79
40.106
4.777
T P
1ao0_A
455
206
110
1.93
27.27
40.092
5.409
T P
1sto_A
208
206
110
2.12
24.55
40.089
4.961
T P
1z7g_C
204
206
113
2.26
16.81
40.012
4.783
T P
1oro_A
213
206
112
2.18
21.43
38.942
4.907
T P
1a97_B
148
206
106
2.12
19.81
38.666
4.781
T P
1lh0_A
213
206
109
2.19
20.18
38.281
4.768
T P
1nul_A
142
206
106
2.21
18.87
37.652
4.585
T P
1umd_B
323
206
72
2.27
13.89
24.894
3.036
T P
1rz3_A
184
206
66
2.62
13.64
21.855
2.428
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]