LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_365.5wLII_11277_26
Total number of 3D structures: 42
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
2fo7_A |
136 |
154 |
135 |
0.62 |
19.26 |
87.067 |
18.818 |
T P |
1w3b_A |
388 |
154 |
136 |
1.29 |
17.65 |
83.698 |
9.753 |
T P |
1hh8_A |
192 |
154 |
133 |
1.27 |
10.53 |
83.125 |
9.676 |
T P |
1wm5_A |
205 |
154 |
132 |
1.29 |
10.61 |
81.875 |
9.478 |
T P |
1e96_B |
185 |
154 |
132 |
1.28 |
10.61 |
81.607 |
9.542 |
T P |
2vq2_A |
220 |
154 |
135 |
1.55 |
17.04 |
81.112 |
8.203 |
T P |
2c0m_C |
302 |
154 |
128 |
1.37 |
19.53 |
79.662 |
8.690 |
T P |
2fi7_A |
223 |
154 |
134 |
1.74 |
10.45 |
79.474 |
7.281 |
T P |
2c0l_A |
292 |
154 |
128 |
1.22 |
19.53 |
79.409 |
9.717 |
T P |
3cvq_A |
289 |
154 |
127 |
1.28 |
12.60 |
79.061 |
9.172 |
T P |
3cv0_A |
300 |
154 |
127 |
1.36 |
12.60 |
78.409 |
8.719 |
T P |
2j9q_A |
300 |
154 |
127 |
1.55 |
19.69 |
78.364 |
7.716 |
T P |
1fch_A |
302 |
154 |
128 |
1.45 |
19.53 |
78.113 |
8.284 |
T P |
2ho1_A |
222 |
154 |
129 |
1.77 |
13.95 |
77.221 |
6.901 |
T P |
2gw1_A |
487 |
154 |
130 |
1.85 |
11.54 |
76.329 |
6.682 |
T P |
3ceq_B |
269 |
154 |
127 |
1.69 |
11.02 |
75.957 |
7.075 |
T P |
2q7f_A |
194 |
154 |
131 |
2.02 |
14.50 |
75.855 |
6.176 |
T P |
3edt_B |
258 |
154 |
129 |
1.82 |
13.18 |
75.311 |
6.707 |
T P |
1xnf_B |
262 |
154 |
132 |
2.02 |
18.94 |
74.269 |
6.214 |
T P |
2pl2_A |
194 |
154 |
127 |
1.94 |
19.69 |
73.074 |
6.218 |
T P |
1a17_A |
159 |
154 |
117 |
1.34 |
11.97 |
72.428 |
8.118 |
T P |
1kt1_A |
374 |
154 |
117 |
1.35 |
13.68 |
72.388 |
8.090 |
T P |
2c2l_A |
281 |
154 |
120 |
1.83 |
17.50 |
72.352 |
6.223 |
T P |
1ihg_A |
364 |
154 |
117 |
1.33 |
15.38 |
72.348 |
8.164 |
T P |
1qz2_A |
285 |
154 |
117 |
1.37 |
13.68 |
72.027 |
7.950 |
T P |
1p5q_A |
283 |
154 |
116 |
1.28 |
13.79 |
71.887 |
8.392 |
T P |
1wao_1 |
471 |
154 |
117 |
1.42 |
11.97 |
71.756 |
7.708 |
T P |
2vyi_A |
128 |
154 |
117 |
1.60 |
15.38 |
71.753 |
6.868 |
T P |
1elr_A |
128 |
154 |
115 |
1.65 |
14.78 |
70.016 |
6.558 |
T P |
1elw_A |
117 |
154 |
116 |
1.55 |
12.07 |
69.874 |
7.012 |
T P |
1na0_A |
119 |
154 |
114 |
1.48 |
20.18 |
69.515 |
7.195 |
T P |
1kt0_A |
357 |
154 |
112 |
1.35 |
13.39 |
69.332 |
7.712 |
T P |
2bug_A |
131 |
154 |
117 |
1.83 |
11.97 |
68.592 |
6.063 |
T P |
2dba_A |
148 |
154 |
115 |
1.72 |
12.17 |
68.230 |
6.309 |
T P |
2fbn_A |
153 |
154 |
115 |
1.87 |
17.39 |
67.248 |
5.846 |
T P |
2vsy_A |
547 |
154 |
120 |
2.14 |
15.83 |
66.166 |
5.357 |
T P |
2e2e_A |
171 |
154 |
110 |
1.88 |
17.27 |
65.488 |
5.552 |
T P |
2vsn_A |
534 |
154 |
114 |
2.05 |
17.54 |
64.401 |
5.313 |
T P |
1na3_A |
86 |
154 |
85 |
1.23 |
21.18 |
53.184 |
6.390 |
T P |
1ouv_A |
265 |
154 |
102 |
2.35 |
16.67 |
49.971 |
4.164 |
T P |
2if4_A |
258 |
154 |
98 |
2.22 |
14.29 |
47.335 |
4.217 |
T P |
2avp_A |
68 |
154 |
68 |
0.76 |
23.53 |
43.709 |
7.926 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]