LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_368.5wLII_11277_50
Total number of 3D structures: 34
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1jr3_D
338
343
333
1.13
17.42
93.440
27.122
T P
1xxh_A
338
343
293
2.01
16.04
71.765
13.863
T P
1jql_B
140
343
133
1.36
12.03
36.713
9.116
T P
1iqp_A
326
343
141
2.54
7.09
27.294
5.336
T P
2chq_A
313
343
134
2.38
8.21
27.084
5.404
T P
1in4_A
298
343
143
2.50
11.89
27.083
5.499
T P
1in6_A
300
343
141
2.47
12.77
26.870
5.477
T P
1hqc_A
314
343
141
2.39
8.51
26.766
5.654
T P
1in5_A
301
343
138
2.41
10.87
26.235
5.493
T P
1in8_A
298
343
138
2.35
12.32
26.232
5.625
T P
1j7k_A
299
343
142
2.50
12.68
26.193
5.454
T P
1in7_A
298
343
139
2.40
12.23
26.164
5.560
T P
1sxj_D
328
343
144
2.51
6.25
26.047
5.513
T P
1sxj_C
322
343
136
2.40
7.35
25.843
5.437
T P
1xxh_E
334
343
138
2.45
6.52
25.608
5.412
T P
1ixr_C
308
343
136
2.38
10.29
25.591
5.482
T P
1ixs_B
315
343
135
2.46
11.11
25.480
5.274
T P
1sxj_E
317
343
142
2.59
5.63
25.452
5.278
T P
1sxj_B
316
343
140
2.51
5.00
24.693
5.373
T P
1xxi_C
366
343
131
2.50
6.11
24.590
5.042
T P
1jr3_A
366
343
127
2.58
7.87
24.344
4.738
T P
2chg_A
223
343
128
2.45
7.81
24.287
5.023
T P
1a5t_A
324
343
132
2.49
9.09
24.144
5.100
T P
2qby_B
368
343
129
2.57
3.88
24.112
4.830
T P
2qby_A
366
343
127
2.63
9.45
23.587
4.657
T P
1fnn_A
379
343
116
2.40
6.03
23.501
4.635
T P
1sxj_A
441
343
122
2.37
9.02
22.803
4.939
T P
1njg_A
240
343
113
2.39
7.96
22.211
4.545
T P
2gno_A
296
343
117
2.66
6.84
22.206
4.234
T P
3bge_A
163
343
82
1.80
8.54
21.978
4.311
T P
3ctd_B
158
343
78
1.80
5.13
20.767
4.113
T P
2c9o_A
398
343
108
2.52
7.41
20.572
4.123
T P
2r9g_L
188
343
80
2.04
7.50
17.679
3.735
T P
2qw6_D
86
343
76
1.97
7.89
17.418
3.678
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]