LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_375.5wLII_11277_59
Total number of 3D structures: 76
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1ys7_B
226
200
189
1.39
13.76
89.651
12.652
T P
2gwr_A
225
200
134
2.04
14.93
55.251
6.251
T P
1w25_A
454
200
113
1.80
10.62
51.638
5.934
T P
2eub_A
121
200
98
1.59
12.24
46.673
5.794
T P
1zes_A
121
200
100
1.67
14.00
46.211
5.657
T P
1mvo_A
121
200
99
1.68
12.12
46.158
5.562
T P
1e6k_A
130
200
100
1.79
13.00
46.130
5.299
T P
2a9o_A
117
200
97
1.52
14.43
46.050
5.981
T P
1dbw_B
125
200
99
1.57
8.08
46.018
5.922
T P
2a9r_A
117
200
97
1.59
13.40
45.943
5.730
T P
1ny5_B
385
200
104
1.90
8.65
45.817
5.212
T P
1ymv_A
124
200
99
1.73
13.13
45.789
5.419
T P
2jba_A
125
200
100
1.70
13.00
45.656
5.567
T P
1p2f_A
217
200
106
1.96
8.49
45.248
5.137
T P
1zh2_A
120
200
96
1.57
14.58
45.189
5.736
T P
1ymu_A
125
200
97
1.79
11.34
45.132
5.130
T P
2j8e_A
128
200
97
1.81
13.40
44.947
5.083
T P
2iyn_B
124
200
97
1.73
13.40
44.939
5.295
T P
1xhf_B
122
200
97
1.64
9.28
44.829
5.590
T P
1xhe_B
122
200
98
1.67
10.20
44.759
5.538
T P
1zgz_A
121
200
99
1.77
12.12
44.730
5.280
T P
1kmi_Y
128
200
97
1.81
11.34
44.536
5.076
T P
1d4z_A
128
200
96
1.87
13.54
44.526
4.864
T P
1ab5_A
125
200
95
1.75
11.58
44.510
5.148
T P
1udr_A
126
200
97
1.91
12.37
44.478
4.823
T P
2rjn_A
135
200
97
1.78
13.40
44.461
5.156
T P
1d5w_A
122
200
96
1.69
8.33
44.432
5.372
T P
3chy_A
128
200
97
1.91
10.31
44.419
4.826
T P
1mih_A
128
200
97
1.87
12.37
44.409
4.922
T P
2che_A
128
200
96
1.88
14.58
44.317
4.856
T P
2zay_A
123
200
99
1.84
10.10
44.296
5.095
T P
2fka_A
128
200
98
1.88
12.24
44.289
4.947
T P
1qkk_A
139
200
97
1.81
10.31
44.110
5.078
T P
1ehc_A
128
200
96
1.89
13.54
44.077
4.834
T P
2jba_B
121
200
96
1.62
13.54
44.070
5.583
T P
1kgs_A
219
200
100
1.94
11.00
44.058
4.900
T P
1hey_A
127
200
99
1.96
11.11
44.024
4.814
T P
1ab6_A
125
200
95
1.86
13.68
43.950
4.847
T P
1e6l_A
127
200
98
1.95
10.20
43.921
4.782
T P
3cg4_A
126
200
95
1.81
6.32
43.833
4.976
T P
2jb9_B
122
200
94
1.68
13.83
43.818
5.287
T P
3bre_B
328
200
98
1.89
8.16
43.646
4.926
T P
1s8n_A
190
200
107
2.12
12.15
43.468
4.814
T P
1tmy_A
118
200
93
1.64
8.60
43.401
5.333
T P
1b00_A
122
200
94
1.74
12.77
43.255
5.106
T P
2qr3_A
121
200
95
1.78
9.47
43.250
5.062
T P
1jbe_A
126
200
94
1.93
13.83
43.026
4.633
T P
1yio_A
198
200
93
1.77
11.83
42.890
4.971
T P
1cye_A
129
200
95
1.92
12.63
42.882
4.693
T P
1l5z_A
146
200
93
1.81
9.68
42.794
4.870
T P
1u0s_Y
118
200
91
1.61
7.69
42.537
5.309
T P
3cu5_B
129
200
94
1.90
10.64
41.591
4.695
T P
1a2o_A
347
200
108
2.24
9.26
40.950
4.607
T P
2qxy_A
119
200
95
2.00
11.58
39.221
4.526
T P
2oqr_A
226
200
89
1.91
11.24
38.979
4.432
T P
1dz3_A
123
200
82
1.64
6.10
38.573
4.722
T P
2jvj_A
132
200
86
2.05
13.95
33.704
4.008
T P
1dc8_A
123
200
91
2.07
9.89
33.561
4.203
T P
1dc7_A
124
200
90
2.22
11.11
31.141
3.886
T P
1a04_A
205
200
87
2.28
11.49
30.639
3.658
T P
2vxo_B
658
200
66
2.62
4.55
20.967
2.425
T P
1gyt_A
503
200
63
2.77
6.35
19.855
2.192
T P
2dqb_C
364
200
58
2.43
12.07
19.409
2.294
T P
3ezu_A
336
200
53
2.59
1.89
18.582
1.974
T P
2pq7_A
174
200
54
2.68
9.26
18.023
1.939
T P
1dgj_A
906
200
52
2.75
3.85
17.142
1.823
T P
1xx7_A
172
200
50
2.47
6.00
16.957
1.943
T P
2o08_A
187
200
48
2.50
4.17
16.906
1.847
T P
3ccg_A
189
200
50
2.75
6.00
16.380
1.755
T P
2ogi_B
194
200
48
2.73
4.17
16.150
1.699
T P
1yoy_A
146
200
50
2.60
6.00
15.911
1.850
T P
2o6i_A
436
200
46
2.50
0.00
15.893
1.773
T P
2hek_A
369
200
49
2.77
8.16
15.699
1.705
T P
3dto_A
189
200
44
2.79
6.82
15.625
1.524
T P
1vlb_A
907
200
46
2.67
2.17
14.759
1.662
T P
1hlr_A
907
200
46
2.67
2.17
14.759
1.662
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]