LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_378.5wLII_11277_68
Total number of 3D structures: 31
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1lml_A
465
131
126
1.59
18.25
90.522
7.454
T P
1c5k_A
397
131
48
2.43
8.33
24.166
1.895
T P
2w8b_B
409
131
42
2.61
2.38
21.259
1.550
T P
1g4x_A
396
131
43
2.78
11.63
20.895
1.493
T P
2aat_A
396
131
39
2.78
10.26
20.306
1.352
T P
1qis_A
396
131
37
2.47
5.41
19.810
1.440
T P
2d66_A
396
131
35
2.57
2.86
19.710
1.311
T P
1qit_A
396
131
36
2.48
5.56
19.699
1.398
T P
2w8b_A
409
131
36
2.56
5.56
19.514
1.352
T P
2hqs_A
412
131
39
2.60
2.56
19.417
1.447
T P
1arh_A
396
131
37
2.69
8.11
19.406
1.328
T P
1aia_A
396
131
37
2.47
2.70
19.288
1.441
T P
1spa_A
396
131
37
2.60
2.70
19.177
1.369
T P
1ari_A
396
131
38
2.70
7.89
19.161
1.356
T P
1bqd_A
395
131
36
2.62
0.00
19.117
1.324
T P
1crz_A
403
131
40
2.70
2.50
18.912
1.430
T P
1ars_A
396
131
37
2.60
2.70
18.901
1.368
T P
1ix6_A
396
131
37
2.69
13.51
18.856
1.327
T P
1ahx_A
396
131
38
2.64
2.63
18.846
1.386
T P
1ix8_A
396
131
35
2.59
8.57
18.737
1.300
T P
1tog_A
395
131
36
2.68
5.56
18.557
1.293
T P
1bqa_A
395
131
36
2.65
5.56
18.057
1.307
T P
5eaa_A
396
131
34
2.69
2.94
17.946
1.219
T P
2d61_A
396
131
35
2.68
8.57
17.876
1.261
T P
1g4v_A
396
131
37
2.82
2.70
17.754
1.269
T P
1tok_A
395
131
34
2.81
5.88
17.692
1.167
T P
1asf_A
396
131
32
2.84
0.00
17.617
1.089
T P
1toi_A
395
131
35
2.79
5.71
17.604
1.210
T P
2q7w_A
378
131
30
2.41
10.00
17.221
1.196
T P
1qir_A
396
131
32
2.58
3.12
16.983
1.195
T P
1aam_A
396
131
31
2.57
3.23
16.097
1.159
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]