LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_38.5wLII_10850_9
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1h4p_A |
408 |
142 |
129 |
1.39 |
15.50 |
86.644 |
8.663 |
T P |
2pbo_A |
394 |
142 |
128 |
1.52 |
14.84 |
84.294 |
7.909 |
T P |
2pb1_A |
394 |
142 |
128 |
1.52 |
14.84 |
84.260 |
7.892 |
T P |
1cz1_A |
394 |
142 |
128 |
1.47 |
15.62 |
84.118 |
8.162 |
T P |
2pc8_A |
394 |
142 |
128 |
1.50 |
15.62 |
83.951 |
8.004 |
T P |
1eqp_A |
394 |
142 |
127 |
1.49 |
14.96 |
83.738 |
7.975 |
T P |
2pf0_A |
394 |
142 |
127 |
1.49 |
14.96 |
83.695 |
7.991 |
T P |
1ceo_A |
332 |
142 |
90 |
1.73 |
11.11 |
59.729 |
4.906 |
T P |
1cec_A |
331 |
142 |
90 |
1.76 |
11.11 |
59.668 |
4.840 |
T P |
1qnr_A |
344 |
142 |
82 |
1.88 |
7.32 |
52.297 |
4.150 |
T P |
1c0d_A |
358 |
142 |
75 |
1.74 |
14.67 |
47.968 |
4.067 |
T P |
1vjz_A |
325 |
142 |
85 |
2.09 |
10.59 |
45.983 |
3.885 |
T P |
2jep_A |
363 |
142 |
83 |
1.97 |
3.61 |
45.115 |
4.002 |
T P |
1edg_A |
380 |
142 |
81 |
2.10 |
8.64 |
41.547 |
3.688 |
T P |
1hjs_A |
332 |
142 |
70 |
1.87 |
14.29 |
40.542 |
3.560 |
T P |
2gft_B |
387 |
142 |
70 |
1.93 |
11.43 |
39.989 |
3.448 |
T P |
1hjq_A |
332 |
142 |
68 |
1.86 |
13.24 |
39.670 |
3.463 |
T P |
1fob_A |
334 |
142 |
65 |
1.83 |
9.23 |
38.231 |
3.368 |
T P |
1ur4_B |
387 |
142 |
68 |
2.31 |
7.35 |
34.787 |
2.823 |
T P |
1wao_1 |
471 |
142 |
55 |
2.51 |
7.27 |
26.711 |
2.108 |
T P |
2qe7_A |
474 |
142 |
58 |
2.76 |
5.17 |
26.621 |
2.030 |
T P |
1xnf_B |
262 |
142 |
56 |
2.53 |
1.79 |
26.141 |
2.132 |
T P |
2fbn_A |
153 |
142 |
52 |
2.59 |
3.85 |
25.040 |
1.930 |
T P |
2pl2_A |
194 |
142 |
50 |
2.65 |
10.00 |
24.738 |
1.819 |
T P |
3ceq_B |
269 |
142 |
52 |
2.65 |
7.69 |
24.652 |
1.890 |
T P |
2gw1_A |
487 |
142 |
47 |
2.48 |
4.26 |
24.477 |
1.824 |
T P |
3edt_B |
258 |
142 |
46 |
2.65 |
8.70 |
24.071 |
1.672 |
T P |
1qz2_A |
285 |
142 |
54 |
2.73 |
1.85 |
23.961 |
1.910 |
T P |
2if4_A |
258 |
142 |
48 |
2.72 |
4.17 |
23.880 |
1.704 |
T P |
2c0m_C |
302 |
142 |
46 |
2.37 |
4.35 |
23.845 |
1.859 |
T P |
1p5q_A |
283 |
142 |
52 |
2.88 |
0.00 |
23.573 |
1.745 |
T P |
1ihg_A |
364 |
142 |
49 |
2.64 |
0.00 |
23.532 |
1.788 |
T P |
2vq2_A |
220 |
142 |
47 |
2.70 |
4.26 |
23.433 |
1.679 |
T P |
1wm5_A |
205 |
142 |
46 |
2.40 |
2.17 |
23.231 |
1.840 |
T P |
1elw_A |
117 |
142 |
45 |
2.73 |
4.44 |
22.440 |
1.592 |
T P |
1kt0_A |
357 |
142 |
46 |
2.81 |
2.17 |
22.436 |
1.582 |
T P |
2q7f_A |
194 |
142 |
44 |
2.46 |
4.55 |
22.391 |
1.721 |
T P |
2fi7_A |
223 |
142 |
43 |
2.57 |
16.28 |
22.047 |
1.612 |
T P |
2c0l_A |
292 |
142 |
46 |
2.65 |
6.52 |
21.876 |
1.672 |
T P |
1hh8_A |
192 |
142 |
47 |
2.49 |
4.26 |
21.816 |
1.815 |
T P |
2e2e_A |
171 |
142 |
42 |
2.67 |
14.29 |
21.395 |
1.516 |
T P |
2dba_A |
148 |
142 |
40 |
2.52 |
7.50 |
20.930 |
1.530 |
T P |
2fo7_A |
136 |
142 |
44 |
2.65 |
6.82 |
20.711 |
1.598 |
T P |
2ho1_A |
222 |
142 |
40 |
2.32 |
12.50 |
20.686 |
1.651 |
T P |
1w3b_A |
388 |
142 |
45 |
2.66 |
8.89 |
20.526 |
1.628 |
T P |
1na0_A |
119 |
142 |
41 |
2.66 |
9.76 |
20.271 |
1.486 |
T P |
1kt1_A |
374 |
142 |
40 |
2.32 |
2.50 |
20.113 |
1.650 |
T P |
3cv0_A |
300 |
142 |
45 |
2.98 |
2.22 |
19.505 |
1.462 |
T P |
1fch_A |
302 |
142 |
40 |
2.45 |
2.50 |
19.505 |
1.570 |
T P |
1a17_A |
159 |
142 |
40 |
2.52 |
7.50 |
19.420 |
1.528 |
T P |
2vyi_A |
128 |
142 |
39 |
2.44 |
2.56 |
19.350 |
1.535 |
T P |
2bug_A |
131 |
142 |
38 |
2.78 |
7.89 |
19.241 |
1.321 |
T P |
3cvq_A |
289 |
142 |
40 |
2.84 |
5.00 |
19.106 |
1.363 |
T P |
2c2l_A |
281 |
142 |
40 |
2.53 |
12.50 |
19.103 |
1.522 |
T P |
2avp_A |
68 |
142 |
36 |
2.54 |
11.11 |
18.878 |
1.364 |
T P |
1na3_A |
86 |
142 |
40 |
2.81 |
7.50 |
18.158 |
1.372 |
T P |
2j9q_A |
300 |
142 |
41 |
2.75 |
4.88 |
18.098 |
1.440 |
T P |
1ouv_A |
265 |
142 |
37 |
2.63 |
2.70 |
17.522 |
1.355 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]