LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_38.5wLII_10850_9
Total number of 3D structures: 58
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1h4p_A
408
142
129
1.39
15.50
86.644
8.663
T P
2pbo_A
394
142
128
1.52
14.84
84.294
7.909
T P
2pb1_A
394
142
128
1.52
14.84
84.260
7.892
T P
1cz1_A
394
142
128
1.47
15.62
84.118
8.162
T P
2pc8_A
394
142
128
1.50
15.62
83.951
8.004
T P
1eqp_A
394
142
127
1.49
14.96
83.738
7.975
T P
2pf0_A
394
142
127
1.49
14.96
83.695
7.991
T P
1ceo_A
332
142
90
1.73
11.11
59.729
4.906
T P
1cec_A
331
142
90
1.76
11.11
59.668
4.840
T P
1qnr_A
344
142
82
1.88
7.32
52.297
4.150
T P
1c0d_A
358
142
75
1.74
14.67
47.968
4.067
T P
1vjz_A
325
142
85
2.09
10.59
45.983
3.885
T P
2jep_A
363
142
83
1.97
3.61
45.115
4.002
T P
1edg_A
380
142
81
2.10
8.64
41.547
3.688
T P
1hjs_A
332
142
70
1.87
14.29
40.542
3.560
T P
2gft_B
387
142
70
1.93
11.43
39.989
3.448
T P
1hjq_A
332
142
68
1.86
13.24
39.670
3.463
T P
1fob_A
334
142
65
1.83
9.23
38.231
3.368
T P
1ur4_B
387
142
68
2.31
7.35
34.787
2.823
T P
1wao_1
471
142
55
2.51
7.27
26.711
2.108
T P
2qe7_A
474
142
58
2.76
5.17
26.621
2.030
T P
1xnf_B
262
142
56
2.53
1.79
26.141
2.132
T P
2fbn_A
153
142
52
2.59
3.85
25.040
1.930
T P
2pl2_A
194
142
50
2.65
10.00
24.738
1.819
T P
3ceq_B
269
142
52
2.65
7.69
24.652
1.890
T P
2gw1_A
487
142
47
2.48
4.26
24.477
1.824
T P
3edt_B
258
142
46
2.65
8.70
24.071
1.672
T P
1qz2_A
285
142
54
2.73
1.85
23.961
1.910
T P
2if4_A
258
142
48
2.72
4.17
23.880
1.704
T P
2c0m_C
302
142
46
2.37
4.35
23.845
1.859
T P
1p5q_A
283
142
52
2.88
0.00
23.573
1.745
T P
1ihg_A
364
142
49
2.64
0.00
23.532
1.788
T P
2vq2_A
220
142
47
2.70
4.26
23.433
1.679
T P
1wm5_A
205
142
46
2.40
2.17
23.231
1.840
T P
1elw_A
117
142
45
2.73
4.44
22.440
1.592
T P
1kt0_A
357
142
46
2.81
2.17
22.436
1.582
T P
2q7f_A
194
142
44
2.46
4.55
22.391
1.721
T P
2fi7_A
223
142
43
2.57
16.28
22.047
1.612
T P
2c0l_A
292
142
46
2.65
6.52
21.876
1.672
T P
1hh8_A
192
142
47
2.49
4.26
21.816
1.815
T P
2e2e_A
171
142
42
2.67
14.29
21.395
1.516
T P
2dba_A
148
142
40
2.52
7.50
20.930
1.530
T P
2fo7_A
136
142
44
2.65
6.82
20.711
1.598
T P
2ho1_A
222
142
40
2.32
12.50
20.686
1.651
T P
1w3b_A
388
142
45
2.66
8.89
20.526
1.628
T P
1na0_A
119
142
41
2.66
9.76
20.271
1.486
T P
1kt1_A
374
142
40
2.32
2.50
20.113
1.650
T P
3cv0_A
300
142
45
2.98
2.22
19.505
1.462
T P
1fch_A
302
142
40
2.45
2.50
19.505
1.570
T P
1a17_A
159
142
40
2.52
7.50
19.420
1.528
T P
2vyi_A
128
142
39
2.44
2.56
19.350
1.535
T P
2bug_A
131
142
38
2.78
7.89
19.241
1.321
T P
3cvq_A
289
142
40
2.84
5.00
19.106
1.363
T P
2c2l_A
281
142
40
2.53
12.50
19.103
1.522
T P
2avp_A
68
142
36
2.54
11.11
18.878
1.364
T P
1na3_A
86
142
40
2.81
7.50
18.158
1.372
T P
2j9q_A
300
142
41
2.75
4.88
18.098
1.440
T P
1ouv_A
265
142
37
2.63
2.70
17.522
1.355
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]