LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_380.5wLII_11277_77
Total number of 3D structures: 38
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1ouv_A |
265 |
129 |
124 |
1.40 |
19.35 |
92.384 |
8.273 |
T P |
1klx_A |
133 |
129 |
107 |
1.89 |
13.08 |
76.950 |
5.364 |
T P |
1w3b_A |
388 |
129 |
97 |
2.20 |
16.49 |
57.775 |
4.217 |
T P |
2fi7_A |
223 |
129 |
85 |
1.93 |
8.24 |
57.346 |
4.195 |
T P |
1e96_B |
185 |
129 |
96 |
2.26 |
11.46 |
56.853 |
4.061 |
T P |
2ho1_A |
222 |
129 |
86 |
1.92 |
8.14 |
56.450 |
4.261 |
T P |
1wm5_A |
205 |
129 |
96 |
2.27 |
12.50 |
56.394 |
4.048 |
T P |
2gw1_A |
487 |
129 |
94 |
2.41 |
10.64 |
55.330 |
3.743 |
T P |
2vsy_A |
547 |
129 |
89 |
2.20 |
12.36 |
54.271 |
3.876 |
T P |
1hh8_A |
192 |
129 |
91 |
2.29 |
10.99 |
53.496 |
3.807 |
T P |
1na0_A |
119 |
129 |
81 |
2.05 |
18.52 |
52.626 |
3.768 |
T P |
2fo7_A |
136 |
129 |
84 |
2.15 |
20.24 |
52.422 |
3.731 |
T P |
2dba_A |
148 |
129 |
80 |
2.01 |
12.50 |
52.285 |
3.797 |
T P |
1wao_1 |
471 |
129 |
81 |
2.12 |
14.81 |
51.719 |
3.652 |
T P |
3ceq_B |
269 |
129 |
86 |
2.29 |
10.47 |
51.676 |
3.604 |
T P |
2j9q_A |
300 |
129 |
87 |
2.27 |
17.24 |
51.510 |
3.670 |
T P |
2vsn_A |
534 |
129 |
86 |
2.36 |
12.79 |
51.413 |
3.498 |
T P |
2c0l_A |
292 |
129 |
88 |
2.23 |
14.77 |
51.007 |
3.771 |
T P |
3cv0_A |
300 |
129 |
82 |
2.21 |
12.20 |
50.659 |
3.545 |
T P |
2q7f_A |
194 |
129 |
79 |
2.05 |
11.39 |
50.038 |
3.680 |
T P |
1fch_A |
302 |
129 |
86 |
2.20 |
17.44 |
49.624 |
3.740 |
T P |
1kt0_A |
357 |
129 |
79 |
2.14 |
10.13 |
49.535 |
3.530 |
T P |
1a17_A |
159 |
129 |
78 |
2.22 |
15.38 |
48.573 |
3.364 |
T P |
2vyi_A |
128 |
129 |
79 |
2.15 |
15.19 |
48.482 |
3.512 |
T P |
1xnf_B |
262 |
129 |
81 |
2.11 |
11.11 |
48.466 |
3.671 |
T P |
2c0m_C |
302 |
129 |
80 |
2.27 |
15.00 |
48.248 |
3.375 |
T P |
3edt_B |
258 |
129 |
79 |
2.28 |
15.19 |
48.192 |
3.322 |
T P |
1kt1_A |
374 |
129 |
77 |
2.13 |
15.58 |
47.925 |
3.459 |
T P |
1qz2_A |
285 |
129 |
78 |
2.05 |
12.82 |
47.869 |
3.629 |
T P |
3cvq_A |
289 |
129 |
81 |
2.16 |
13.58 |
47.506 |
3.584 |
T P |
1na3_A |
86 |
129 |
69 |
2.07 |
26.09 |
46.388 |
3.184 |
T P |
2bug_A |
131 |
129 |
77 |
2.28 |
14.29 |
46.094 |
3.229 |
T P |
2c2l_A |
281 |
129 |
74 |
2.17 |
13.51 |
44.863 |
3.255 |
T P |
2avp_A |
68 |
129 |
61 |
1.61 |
27.87 |
44.108 |
3.562 |
T P |
2fbn_A |
153 |
129 |
71 |
2.14 |
14.08 |
43.149 |
3.168 |
T P |
1ihg_A |
364 |
129 |
69 |
2.77 |
11.59 |
34.096 |
2.402 |
T P |
2wb7_A |
525 |
129 |
47 |
2.22 |
8.51 |
26.495 |
2.026 |
T P |
1n8t_A |
557 |
129 |
44 |
2.70 |
13.64 |
22.705 |
1.570 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]