LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_384.5wLII_11277_92
Total number of 3D structures: 21
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
3edd_A |
597 |
63 |
53 |
1.06 |
37.74 |
84.698 |
4.565 |
T P |
3edf_A |
597 |
63 |
54 |
1.31 |
37.04 |
84.475 |
3.831 |
T P |
3ede_A |
597 |
63 |
54 |
1.30 |
37.04 |
84.350 |
3.844 |
T P |
2qri_A |
398 |
63 |
44 |
2.28 |
2.27 |
50.542 |
1.848 |
T P |
2mha_A |
270 |
63 |
43 |
2.36 |
9.30 |
48.048 |
1.746 |
T P |
2clv_A |
278 |
63 |
42 |
2.25 |
2.38 |
47.804 |
1.789 |
T P |
2qrt_A |
398 |
63 |
44 |
2.63 |
4.55 |
46.710 |
1.610 |
T P |
1rjy_A |
278 |
63 |
41 |
2.22 |
4.88 |
46.342 |
1.771 |
T P |
1fo0_H |
276 |
63 |
42 |
2.37 |
9.52 |
45.986 |
1.704 |
T P |
1fzk_A |
274 |
63 |
41 |
2.38 |
9.76 |
45.574 |
1.652 |
T P |
1kj3_H |
279 |
63 |
43 |
2.52 |
11.63 |
45.569 |
1.638 |
T P |
1fzm_A |
274 |
63 |
41 |
2.38 |
9.76 |
45.373 |
1.652 |
T P |
1kj2_I |
277 |
63 |
42 |
2.41 |
9.52 |
45.282 |
1.675 |
T P |
1lk2_A |
274 |
63 |
41 |
2.55 |
7.32 |
45.125 |
1.547 |
T P |
2zsv_C |
278 |
63 |
40 |
2.58 |
7.50 |
44.276 |
1.490 |
T P |
1s7q_A |
276 |
63 |
41 |
2.69 |
7.32 |
43.752 |
1.471 |
T P |
2qrs_A |
398 |
63 |
40 |
2.52 |
5.00 |
43.708 |
1.525 |
T P |
1leg_A |
274 |
63 |
41 |
2.76 |
4.88 |
43.706 |
1.432 |
T P |
1wbz_A |
275 |
63 |
39 |
2.62 |
5.13 |
43.453 |
1.433 |
T P |
1t0n_A |
278 |
63 |
39 |
2.56 |
7.69 |
43.107 |
1.467 |
T P |
1n59_A |
276 |
63 |
40 |
2.67 |
7.50 |
42.841 |
1.443 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]