LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_387.5wLII_11277_103
Total number of 3D structures: 111
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1wek_A
208
198
177
1.14
23.16
86.842
14.221
T P
1ydh_A
184
198
159
1.66
15.72
74.595
9.040
T P
1weh_A
171
198
161
1.86
18.63
73.144
8.203
T P
2a33_A
175
198
154
1.48
20.13
72.856
9.775
T P
3gh1_A
448
198
161
1.90
15.53
72.286
8.053
T P
3bq9_A
446
198
161
1.89
15.53
68.424
8.109
T P
2iz6_A
159
198
134
1.81
25.37
61.652
7.033
T P
1t35_E
184
198
152
1.95
17.76
59.882
7.406
T P
1rcu_A
170
198
138
1.86
24.64
59.794
7.042
T P
3b51_X
633
198
107
2.29
9.35
36.961
4.479
T P
1su8_A
633
198
109
2.34
6.42
36.744
4.476
T P
1qpz_A
339
198
84
2.18
8.33
31.440
3.684
T P
1jhz_A
276
198
82
2.31
7.32
31.090
3.399
T P
1jh9_A
339
198
83
2.12
8.43
31.047
3.741
T P
1q7c_A
243
198
87
2.21
12.64
30.752
3.774
T P
2puc_A
338
198
79
2.03
10.13
30.732
3.704
T P
1q7b_A
243
198
88
2.24
12.50
30.466
3.768
T P
2cf2_E
226
198
86
2.42
11.63
30.405
3.411
T P
1jqb_A
351
198
88
2.45
10.23
30.302
3.446
T P
2b83_A
351
198
91
2.49
9.89
30.237
3.516
T P
2b4q_A
256
198
87
2.36
14.94
30.217
3.539
T P
2fwm_X
212
198
86
2.35
15.12
30.160
3.514
T P
1xg5_C
257
198
86
2.38
10.47
29.809
3.471
T P
1vpw_A
338
198
82
2.12
10.98
29.809
3.699
T P
1jft_A
340
198
82
2.06
9.76
29.724
3.792
T P
1kev_A
351
198
88
2.46
10.23
29.720
3.431
T P
2pue_A
338
198
81
2.08
11.11
29.359
3.718
T P
1jfs_A
339
198
81
2.10
9.88
29.343
3.687
T P
1bdh_A
338
198
81
2.10
11.11
29.320
3.685
T P
1h0c_A
385
198
80
2.68
8.75
27.101
2.877
T P
1j04_A
386
198
76
2.75
9.21
26.744
2.666
T P
2dr1_A
381
198
72
2.54
9.72
24.174
2.723
T P
2dkj_A
402
198
69
2.46
13.04
23.297
2.692
T P
1amu_A
509
198
72
2.72
11.11
22.942
2.556
T P
2q0t_A
258
198
51
2.51
9.80
18.690
1.950
T P
3dhi_A
498
198
53
2.33
7.55
18.392
2.185
T P
1t0q_A
491
198
57
2.62
5.26
18.208
2.099
T P
2rdb_A
491
198
50
2.77
6.00
17.230
1.745
T P
2inc_A
491
198
50
2.63
6.00
16.906
1.833
T P
3eqr_B
271
198
48
2.48
8.33
16.716
1.860
T P
2ew9_A
149
198
50
2.59
12.00
16.543
1.859
T P
1u46_B
257
198
44
2.87
4.55
15.474
1.483
T P
2gli_A
155
198
40
2.43
7.50
14.181
1.580
T P
1u54_A
263
198
40
2.52
2.50
14.097
1.524
T P
2inn_A
496
198
40
2.88
2.50
13.711
1.341
T P
1p6t_A
151
198
40
2.59
7.50
13.382
1.489
T P
1qup_A
221
198
41
2.82
0.00
12.945
1.402
T P
1kqk_A
80
198
30
2.26
10.00
12.866
1.271
T P
2inp_A
494
198
37
3.02
0.00
12.712
1.187
T P
1osd_A
72
198
30
2.48
3.33
12.583
1.165
T P
2cot_A
77
198
31
2.16
6.45
12.516
1.374
T P
2rml_A
147
198
36
2.96
5.56
12.478
1.177
T P
2prt_A
115
198
36
2.62
2.78
12.123
1.323
T P
1mwy_A
73
198
33
2.36
12.12
12.043
1.343
T P
1jk9_B
243
198
36
2.94
5.56
11.851
1.186
T P
2dlq_A
124
198
35
2.77
2.86
11.806
1.221
T P
2ee8_A
106
198
32
2.44
9.38
11.568
1.261
T P
1g2d_C
89
198
36
2.56
0.00
11.490
1.354
T P
1s6o_A
76
198
34
2.46
8.82
11.384
1.329
T P
2eq2_A
46
198
28
2.24
3.57
11.265
1.195
T P
1yju_A
75
198
29
2.60
3.45
11.213
1.075
T P
2gcf_A
73
198
29
2.38
3.45
11.009
1.170
T P
1y3j_A
77
198
30
2.69
3.33
10.936
1.077
T P
1yjr_A
75
198
32
2.81
12.50
10.915
1.100
T P
1a1g_A
84
198
31
2.61
9.68
10.899
1.145
T P
1aay_A
85
198
32
2.71
6.25
10.857
1.138
T P
1k0v_A
73
198
29
2.58
6.90
10.857
1.084
T P
2i13_A
151
198
33
2.77
6.06
10.818
1.152
T P
1a1h_A
85
198
30
2.69
3.33
10.727
1.077
T P
1opz_A
76
198
32
2.67
6.25
10.659
1.154
T P
1g2f_C
89
198
32
2.70
0.00
10.653
1.144
T P
1jk2_A
85
198
30
2.54
3.33
10.628
1.138
T P
2yt9_A
95
198
29
2.67
6.90
10.581
1.047
T P
1q8l_A
84
198
27
2.55
0.00
10.564
1.020
T P
2rop_A
142
198
27
2.49
0.00
10.483
1.041
T P
2dmd_A
96
198
28
2.38
7.14
10.390
1.131
T P
1kvi_A
79
198
29
2.70
10.34
10.320
1.035
T P
2ytk_A
46
198
25
2.01
12.00
10.309
1.187
T P
2eq1_A
46
198
26
2.39
0.00
10.205
1.043
T P
1aw0_A
72
198
29
2.66
10.34
10.204
1.053
T P
1jww_A
80
198
29
2.45
3.45
10.170
1.138
T P
1ubd_C
114
198
30
2.68
6.67
10.150
1.081
T P
1mey_F
84
198
28
2.73
3.57
10.144
0.991
T P
1a1i_A
85
198
30
2.82
3.33
10.109
1.026
T P
1fvq_A
72
198
29
2.69
6.90
10.047
1.039
T P
1f2i_G
66
198
29
2.44
6.90
10.040
1.141
T P
3cjk_B
75
198
30
2.65
3.33
10.006
1.093
T P
1x6e_A
72
198
27
2.51
3.70
9.943
1.035
T P
2qif_A
69
198
29
2.62
3.45
9.938
1.067
T P
1afi_A
72
198
29
2.94
6.90
9.935
0.955
T P
1zaa_C
85
198
29
2.56
3.45
9.924
1.090
T P
1p47_A
87
198
31
2.66
3.23
9.855
1.121
T P
2ene_A
46
198
24
2.35
8.33
9.816
0.978
T P
1cpz_A
68
198
29
3.03
10.34
9.807
0.928
T P
2emk_A
46
198
24
2.16
4.17
9.800
1.063
T P
1tf6_D
182
198
28
2.82
0.00
9.777
0.960
T P
2emw_A
44
198
23
2.07
13.04
9.348
1.058
T P
2ebt_A
100
198
25
2.64
12.00
9.317
0.913
T P
2ytr_A
46
198
25
2.48
8.00
9.124
0.971
T P
2g9o_A
77
198
26
2.78
3.85
9.106
0.904
T P
2ofg_X
106
198
23
2.39
4.35
8.769
0.925
T P
2en6_A
46
198
25
2.39
16.00
8.725
1.005
T P
2csh_A
110
198
24
2.97
12.50
8.719
0.781
T P
2aj0_A
71
198
23
2.56
4.35
8.563
0.866
T P
2yts_A
46
198
23
2.25
4.35
8.264
0.978
T P
2yrj_A
46
198
25
2.71
12.00
8.258
0.891
T P
2emj_A
46
198
24
2.99
12.50
8.067
0.776
T P
2eoe_A
46
198
24
2.81
8.33
8.042
0.826
T P
2em2_A
46
198
23
2.64
13.04
7.863
0.840
T P
2eog_A
44
198
23
2.53
4.35
7.815
0.876
T P
2eow_A
46
198
18
2.01
22.22
7.315
0.852
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]