LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_391.5wLII_11277_114
Total number of 3D structures: 65
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
1qfg_A
707
304
268
1.75
12.69
80.262
14.495
T P
2fcp_A
705
304
268
1.77
11.94
80.201
14.368
T P
1by5_A
697
304
265
1.80
12.83
79.105
13.923
T P
1fi1_A
707
304
261
1.69
12.26
78.666
14.582
T P
1fcp_A
705
304
268
1.86
12.31
78.403
13.679
T P
1qff_A
707
304
265
1.84
12.83
77.952
13.656
T P
1kmp_A
647
304
238
1.85
10.50
70.253
12.219
T P
1po0_A
661
304
248
1.96
10.89
68.938
12.011
T P
1kmo_A
661
304
244
1.90
11.48
66.600
12.179
T P
2hdf_A
584
304
203
1.95
7.39
57.722
9.905
T P
1nqf_A
544
304
222
2.16
6.31
56.141
9.834
T P
2gsk_A
590
304
210
2.09
6.19
55.410
9.597
T P
2iah_A
752
304
224
2.12
5.80
54.644
10.075
T P
1fep_A
680
304
210
2.13
7.14
54.520
9.400
T P
1xkw_A
655
304
220
2.03
9.09
54.203
10.342
T P
2hdi_A
598
304
204
1.97
8.33
53.966
9.853
T P
1xkh_A
687
304
223
2.15
6.28
52.405
9.918
T P
3ddr_A
753
304
218
2.03
8.72
52.354
10.237
T P
2guf_A
551
304
197
2.16
6.60
51.288
8.723
T P
3csl_A
753
304
219
2.10
9.13
50.907
9.949
T P
1oh2_Q
413
304
165
1.96
7.27
42.688
7.994
T P
1af6_A
421
304
157
1.87
11.46
42.026
7.954
T P
1a0s_P
413
304
167
2.02
7.19
41.922
7.883
T P
2mpr_A
421
304
164
2.05
7.93
38.883
7.642
T P
2fgq_X
330
304
145
2.42
9.66
35.540
5.764
T P
2fgr_A
332
304
136
2.10
5.88
35.498
6.176
T P
1e54_A
332
304
143
2.41
9.09
34.593
5.691
T P
1gfm_A
340
304
137
2.40
8.76
33.925
5.473
T P
1gfq_A
340
304
137
2.39
8.76
33.884
5.496
T P
2j1n_A
346
304
140
2.35
5.71
33.709
5.721
T P
1bt9_A
340
304
137
2.44
7.30
33.485
5.395
T P
2ixw_A
343
304
144
2.46
3.47
33.358
5.627
T P
1hxt_A
340
304
134
2.42
5.97
32.966
5.327
T P
1hxu_A
340
304
134
2.34
7.46
32.940
5.502
T P
1mpf_A
340
304
136
2.41
7.35
32.927
5.413
T P
2ixx_A
354
304
138
2.30
6.52
32.765
5.745
T P
1hxx_A
340
304
135
2.41
8.89
32.750
5.371
T P
1gfo_A
340
304
135
2.38
8.89
32.411
5.448
T P
1gfn_A
327
304
138
2.49
7.25
32.389
5.319
T P
1osm_A
342
304
144
2.47
6.94
32.187
5.613
T P
2o4v_A
411
304
140
2.35
7.86
32.057
5.718
T P
1pho_A
330
304
135
2.33
9.63
31.728
5.565
T P
2zfg_A
339
304
130
2.41
7.69
30.892
5.179
T P
1t16_A
427
304
119
2.18
4.20
28.625
5.229
T P
2r4p_A
418
304
115
2.06
4.35
28.107
5.314
T P
3dwo_X
444
304
123
2.20
4.88
28.081
5.340
T P
2iwv_A
277
304
117
2.18
3.42
27.766
5.137
T P
3dwn_A
421
304
119
2.26
7.56
27.524
5.037
T P
1gfp_A
340
304
127
2.45
7.09
27.446
4.983
T P
2r4l_B
421
304
119
2.33
7.56
27.208
4.906
T P
2r4o_A
421
304
113
2.16
7.96
26.841
5.001
T P
2r4n_A
421
304
116
2.28
2.59
26.821
4.880
T P
2r89_A
363
304
103
2.12
11.65
26.596
4.634
T P
2r88_A
365
304
108
2.27
3.70
26.337
4.555
T P
3bs0_A
414
304
114
2.32
7.02
26.061
4.704
T P
2r8a_A
360
304
103
2.25
9.71
24.199
4.378
T P
3bry_A
389
304
109
2.43
8.26
24.063
4.306
T P
1i78_A
297
304
98
2.08
5.10
24.007
4.490
T P
2jqy_A
280
304
91
2.49
5.49
21.115
3.515
T P
1bxw_A
172
304
78
2.20
3.85
19.876
3.394
T P
1qj8_A
148
304
71
2.05
8.45
18.243
3.303
T P
1g90_A
176
304
69
2.46
5.80
16.550
2.694
T P
2ge4_A
177
304
66
2.54
12.12
15.031
2.501
T P
2jmm_A
156
304
57
2.11
12.28
13.896
2.580
T P
2z3q_B
81
304
40
2.53
2.50
8.581
1.520
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]