LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_393.5wLII_11277_121
Total number of 3D structures: 94
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
2awn_B
374
126
120
1.75
17.50
88.234
6.488
T P
2r6g_B
372
126
121
1.83
18.18
85.815
6.275
T P
2it1_A
362
126
114
1.77
22.81
83.546
6.086
T P
1q1b_A
367
126
118
1.98
18.64
81.061
5.671
T P
1v43_A
353
126
113
1.93
22.12
80.228
5.562
T P
1vci_A
353
126
113
1.91
22.12
80.132
5.613
T P
1g29_1
372
126
114
2.15
24.56
74.325
5.057
T P
2yyz_A
358
126
107
1.94
24.30
72.883
5.238
T P
1oxx_K
352
126
103
1.92
17.48
71.439
5.088
T P
2d62_A
375
126
108
2.00
22.22
69.426
5.136
T P
1oxs_C
352
126
101
1.94
14.85
69.218
4.946
T P
1z47_A
345
126
99
2.15
18.18
62.550
4.398
T P
3d31_A
348
126
73
1.72
26.03
53.543
4.004
T P
2onk_A
240
126
71
1.57
22.54
53.401
4.241
T P
2hyd_A
578
126
73
1.98
19.18
50.966
3.509
T P
2cbz_A
230
126
69
1.95
17.39
48.874
3.373
T P
1vpl_A
238
126
66
1.71
19.70
48.264
3.638
T P
1b0u_A
258
126
69
2.09
24.64
45.296
3.154
T P
2ihy_B
261
126
68
2.10
22.06
45.098
3.086
T P
1f3o_A
232
126
58
1.55
18.97
43.059
3.512
T P
2pcj_A
223
126
57
1.85
15.79
42.711
2.928
T P
2olj_A
242
126
70
2.31
24.29
41.753
2.902
T P
1l2t_B
232
126
58
1.87
17.24
41.229
2.938
T P
3c41_J
242
126
66
2.03
19.70
39.510
3.095
T P
2vr5_A
715
126
57
2.90
5.26
27.604
1.897
T P
1qho_A
686
126
50
2.68
8.00
25.912
1.800
T P
1p9v_A
310
126
44
2.19
6.82
25.810
1.923
T P
1v3j_A
686
126
50
2.62
0.00
25.205
1.841
T P
1s7j_A
260
126
45
2.36
11.11
24.575
1.832
T P
1v3k_A
686
126
48
2.63
8.33
24.402
1.756
T P
1ukt_A
686
126
48
2.68
4.17
24.339
1.730
T P
1cgu_A
684
126
47
2.78
10.64
24.321
1.631
T P
3edn_A
299
126
43
2.61
0.00
24.185
1.589
T P
1u1v_A
278
126
45
2.57
2.22
24.117
1.685
T P
3cgt_A
684
126
45
2.68
13.33
24.100
1.618
T P
1cyg_A
680
126
49
2.72
2.04
24.045
1.735
T P
1qy9_D
297
126
43
2.49
6.98
24.000
1.663
T P
1uks_A
686
126
43
2.54
6.98
23.904
1.628
T P
2d0f_A
637
126
47
2.61
4.26
23.840
1.736
T P
1xub_A
278
126
44
2.55
2.27
23.827
1.662
T P
1ji2_A
585
126
45
2.81
13.33
23.688
1.549
T P
1d7f_A
686
126
49
2.78
8.16
23.616
1.700
T P
1t6k_A
278
126
43
2.74
6.98
23.413
1.514
T P
1cgt_A
684
126
43
2.72
9.30
23.410
1.524
T P
2e8y_A
712
126
45
2.74
8.89
23.395
1.583
T P
2pwf_C
556
126
43
2.72
0.00
23.178
1.525
T P
2otn_A
293
126
44
2.64
6.82
23.176
1.608
T P
1ym5_A
294
126
47
2.71
4.26
23.133
1.670
T P
1u1w_B
279
126
41
2.36
2.44
23.091
1.663
T P
1m7x_B
591
126
45
2.93
6.67
22.867
1.486
T P
2q9j_A
274
126
44
2.57
2.27
22.785
1.646
T P
1wzk_A
585
126
42
2.68
9.52
22.628
1.513
T P
1pam_A
686
126
42
2.79
4.76
22.574
1.452
T P
1jf6_A
585
126
41
2.73
12.20
22.484
1.447
T P
1wzl_A
585
126
41
2.64
12.20
22.407
1.495
T P
1zja_A
557
126
40
2.74
5.00
21.969
1.406
T P
1u0k_A
284
126
43
2.83
6.98
21.965
1.467
T P
1g1y_A
585
126
40
2.60
12.50
21.965
1.482
T P
2pwe_A
556
126
43
2.85
6.98
21.875
1.456
T P
2d2o_A
585
126
43
2.75
6.98
21.675
1.510
T P
1bf2_A
750
126
40
2.58
12.50
21.513
1.494
T P
2pwh_A
556
126
44
2.94
4.55
21.488
1.449
T P
1vfo_A
585
126
37
2.65
5.41
21.430
1.343
T P
2hy5_A
130
126
42
2.62
9.52
21.268
1.544
T P
1sma_A
588
126
42
2.61
9.52
21.190
1.551
T P
1izk_A
637
126
42
2.60
0.00
21.130
1.556
T P
4cgt_A
678
126
39
2.72
10.26
20.908
1.381
T P
1uh4_A
637
126
41
2.74
4.88
20.553
1.442
T P
1jf5_A
585
126
39
2.77
10.26
20.360
1.359
T P
1j0j_A
588
126
40
2.76
12.50
20.188
1.399
T P
3fve_A
283
126
38
2.70
7.89
20.104
1.358
T P
1qya_B
307
126
39
2.72
5.13
20.085
1.381
T P
2azp_A
318
126
39
2.88
15.38
19.705
1.310
T P
1bwz_A
274
126
37
2.74
10.81
19.609
1.305
T P
1ji1_A
637
126
38
2.75
2.63
19.548
1.333
T P
2hy5_C
101
126
38
2.66
0.00
19.509
1.378
T P
3ejx_D
301
126
36
2.44
16.67
19.497
1.418
T P
2gke_A
274
126
34
2.52
5.88
19.478
1.300
T P
2d1p_C
95
126
36
2.68
2.78
19.463
1.296
T P
1x9a_A
87
126
38
2.91
13.16
19.193
1.264
T P
1gvi_A
588
126
36
2.83
11.11
19.052
1.229
T P
2d1p_A
130
126
33
2.47
9.09
18.205
1.285
T P
1jx7_A
117
126
32
2.48
9.38
17.841
1.239
T P
1wzm_A
585
126
30
2.49
10.00
17.788
1.156
T P
1w61_B
357
126
33
2.96
12.12
17.705
1.079
T P
1l1s_A
111
126
34
2.64
11.76
17.564
1.243
T P
2qs7_A
138
126
32
2.63
9.38
17.527
1.173
T P
1j0h_A
588
126
33
2.60
9.09
17.442
1.224
T P
2hy5_B
132
126
33
2.78
6.06
17.017
1.144
T P
2d1p_B
119
126
34
2.68
8.82
16.977
1.221
T P
2q9h_A
274
126
31
2.72
0.00
16.761
1.098
T P
1rhx_A
87
126
31
2.82
3.23
16.664
1.063
T P
1izj_A
637
126
30
2.79
0.00
16.022
1.037
T P
1ea9_C
583
126
20
2.42
10.00
11.713
0.792
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]