LGA
Sequence Independent Analysis (LGA)
Frame of reference: Cat.Q2246_545_394.5wLII_11277_122
Total number of 3D structures: 20
LGA calculations using distance cutoff DIST: 4.0 A
Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY
Structure Deviation Summary
Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)
Structures ordered by LGA_S - score
Structure |
NS |
NT |
N(dist=4.0) |
RMSD(N) |
Seq_ID(N) |
LGA_S |
LGA_Q |
PLOTS |
1jx7_A |
117 |
114 |
111 |
0.39 |
26.13 |
97.165 |
22.467 |
T P |
2hy5_A |
130 |
114 |
111 |
1.45 |
15.32 |
90.632 |
7.177 |
T P |
2d1p_A |
130 |
114 |
112 |
1.56 |
16.07 |
90.505 |
6.752 |
T P |
2hy5_B |
132 |
114 |
109 |
1.70 |
22.02 |
86.634 |
6.048 |
T P |
2d1p_B |
119 |
114 |
110 |
1.89 |
18.18 |
85.103 |
5.540 |
T P |
1l1s_A |
111 |
114 |
105 |
1.70 |
14.29 |
84.280 |
5.824 |
T P |
2pd2_A |
108 |
114 |
103 |
1.72 |
17.48 |
82.079 |
5.646 |
T P |
2hy5_C |
101 |
114 |
100 |
1.63 |
15.00 |
79.936 |
5.779 |
T P |
2fb6_A |
116 |
114 |
99 |
1.81 |
13.13 |
75.750 |
5.174 |
T P |
2d1p_C |
95 |
114 |
93 |
1.68 |
18.28 |
74.242 |
5.217 |
T P |
2qs7_A |
138 |
114 |
104 |
2.03 |
15.38 |
68.065 |
4.888 |
T P |
1x9a_A |
87 |
114 |
80 |
2.17 |
12.50 |
59.154 |
3.522 |
T P |
1rhx_A |
87 |
114 |
75 |
2.14 |
12.00 |
53.929 |
3.349 |
T P |
2w27_A |
401 |
114 |
78 |
2.58 |
5.13 |
45.026 |
2.911 |
T P |
1o94_A |
729 |
114 |
75 |
2.64 |
9.33 |
41.079 |
2.734 |
T P |
1rw7_A |
235 |
114 |
63 |
2.46 |
14.29 |
39.401 |
2.457 |
T P |
1djq_A |
729 |
114 |
69 |
2.64 |
10.14 |
39.353 |
2.520 |
T P |
2yxo_B |
265 |
114 |
66 |
2.75 |
9.09 |
35.172 |
2.318 |
T P |
1ps9_A |
671 |
114 |
60 |
2.68 |
10.00 |
33.627 |
2.160 |
T P |
1pkx_B |
589 |
114 |
50 |
2.62 |
12.00 |
30.087 |
1.841 |
T P |
NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)
Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures",
Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374.
[MEDLINE]