LGA
Sequence Independent Analysis (LGA)

Frame of reference: Cat.Q2246_545_395.5wLII_11277_123
Total number of 3D structures: 114
LGA calculations using distance cutoff DIST: 4.0 A

Residues superimposed below 2.00 A: GREEN
Residues superimposed below 4.00 A: YELLOW
Residues superimposed below 6.00 A: ORANGE
Residues superimposed below 8.00 A: BROWN
Residues superimposed above 8.00 A or not aligned: RED
Terminal residues not aligned: GREY

Structure Deviation Summary

Calculations based on one final LGA superposition
(Bar representation of 3D plots, TEXT)

Structures ordered by LGA_S - score
Structure
NS
NT
N(dist=4.0)
RMSD(N)
Seq_ID(N)
LGA_S
LGA_Q
PLOTS
3c99_A
380
154
137
0.68
20.44
88.249
17.582
T P
3cfs_B
383
154
137
0.82
20.44
88.044
14.848
T P
3cfv_B
393
154
137
0.84
20.44
87.790
14.545
T P
2aq5_A
395
154
115
1.45
10.43
72.015
7.437
T P
2b4e_A
386
154
115
1.34
10.43
71.992
7.968
T P
2pm6_D
288
154
116
1.58
10.34
70.979
6.922
T P
3fm0_A
328
154
112
1.50
16.07
70.682
6.999
T P
2pm9_B
280
154
117
1.69
9.40
70.566
6.554
T P
2pm7_D
288
154
117
1.62
9.40
70.261
6.792
T P
1erj_C
357
154
114
1.47
11.40
69.993
7.238
T P
3bg1_A
285
154
117
1.75
9.40
69.651
6.323
T P
2hes_X
308
154
115
1.63
10.43
69.575
6.658
T P
1vyh_C
310
154
113
1.38
13.27
69.330
7.653
T P
2zkq_a
306
154
113
1.52
9.73
69.008
6.969
T P
1tbg_A
340
154
113
1.47
11.50
68.840
7.218
T P
2bcj_B
339
154
113
1.45
11.50
68.774
7.271
T P
2pbi_D
354
154
112
1.55
13.39
68.714
6.776
T P
1got_B
339
154
113
1.48
11.50
68.657
7.158
T P
2h9l_A
321
154
113
1.50
11.50
68.404
7.041
T P
2h6n_B
305
154
114
1.70
7.89
68.193
6.317
T P
1gxr_A
335
154
113
1.53
9.73
68.179
6.917
T P
2cnx_A
306
154
113
1.55
10.62
68.170
6.834
T P
3emh_A
300
154
114
1.69
7.02
68.153
6.366
T P
2h14_A
303
154
113
1.56
10.62
68.099
6.804
T P
3frx_B
313
154
111
1.47
12.61
68.091
7.061
T P
2h9m_A
304
154
114
1.72
7.89
68.045
6.277
T P
2co0_A
304
154
113
1.57
10.62
68.037
6.768
T P
2gnq_A
316
154
113
1.54
11.50
67.965
6.891
T P
3dm0_A
675
154
112
1.54
14.29
67.934
6.825
T P
2g99_A
304
154
113
1.61
10.62
67.860
6.589
T P
2g9a_A
310
154
112
1.55
11.61
67.849
6.774
T P
1nex_B
444
154
109
1.62
13.76
67.384
6.354
T P
1r5m_A
351
154
110
1.60
8.18
67.159
6.475
T P
1a0r_B
339
154
111
1.47
12.61
66.943
7.079
T P
1p22_A
402
154
109
1.68
13.76
65.166
6.108
T P
2ovr_B
442
154
107
1.59
11.21
64.750
6.336
T P
1nr0_A
610
154
111
1.85
9.91
62.702
5.691
T P
2huf_A
384
154
50
2.55
14.00
21.669
1.886
T P
2fgs_A
169
154
47
2.67
6.38
21.574
1.695
T P
1p3w_B
385
154
47
2.54
10.64
21.360
1.784
T P
1eg5_B
365
154
47
2.57
2.13
20.488
1.758
T P
1j04_A
386
154
47
2.52
6.38
20.372
1.792
T P
2gms_A
390
154
45
2.65
2.22
19.170
1.638
T P
2rdo_7
684
154
44
2.56
2.27
19.111
1.652
T P
1vjo_A
377
154
44
2.46
4.55
19.051
1.717
T P
2dr1_A
381
154
43
2.88
9.30
18.988
1.445
T P
1dfo_B
417
154
42
2.60
4.76
18.744
1.553
T P
1m32_B
362
154
39
2.56
5.13
18.294
1.468
T P
2e7j_A
344
154
42
2.76
7.14
18.075
1.468
T P
1mdx_A
366
154
41
2.58
9.76
18.048
1.529
T P
1t3i_A
406
154
44
2.80
11.36
18.005
1.516
T P
1b5p_A
382
154
40
2.68
0.00
17.924
1.438
T P
3f9t_A
394
154
39
2.74
2.56
17.900
1.373
T P
2r0t_A
386
154
40
2.37
2.50
17.793
1.617
T P
1i29_A
405
154
39
2.69
7.69
17.723
1.399
T P
1g0d_A
666
154
42
2.60
11.90
17.539
1.557
T P
1v2d_A
365
154
38
2.54
0.00
17.317
1.439
T P
1bkg_A
382
154
39
2.76
2.56
17.245
1.364
T P
3b8x_B
388
154
40
2.70
2.50
17.142
1.429
T P
1kmj_A
405
154
40
2.70
10.00
17.064
1.429
T P
1n2t_A
385
154
38
2.65
5.26
16.911
1.379
T P
3frk_A
365
154
40
2.71
2.50
16.736
1.425
T P
2z9v_A
392
154
38
2.42
2.63
16.671
1.510
T P
1jf9_A
405
154
38
2.76
7.89
16.667
1.328
T P
2ene_A
46
154
28
1.81
3.57
16.609
1.463
T P
2ch1_A
387
154
40
2.72
2.50
16.595
1.416
T P
1ubd_C
114
154
33
2.40
15.15
16.428
1.319
T P
2yrr_A
352
154
38
2.74
5.26
16.133
1.337
T P
1h0c_A
385
154
39
2.90
2.56
16.115
1.302
T P
3b46_B
424
154
35
2.78
8.57
16.069
1.215
T P
2eok_A
42
154
28
2.13
7.14
15.673
1.257
T P
2eog_A
44
154
28
2.08
3.57
15.573
1.283
T P
2yrj_A
46
154
29
2.21
10.34
15.447
1.254
T P
1b5o_A
382
154
35
2.57
5.71
15.260
1.312
T P
1ecx_B
365
154
34
2.53
14.71
15.168
1.295
T P
2epy_A
42
154
31
2.23
12.90
15.044
1.333
T P
2ytr_A
46
154
30
2.46
3.33
14.539
1.174
T P
1qz9_A
404
154
33
2.49
0.00
14.481
1.274
T P
2en6_A
46
154
26
2.04
3.85
14.384
1.217
T P
2csh_A
110
154
33
2.62
0.00
13.799
1.212
T P
2yts_A
46
154
31
2.73
9.68
13.278
1.095
T P
2emh_A
46
154
26
2.34
3.85
12.965
1.066
T P
1a1h_A
85
154
29
2.66
0.00
12.528
1.050
T P
2ytn_A
46
154
29
2.55
6.90
12.515
1.096
T P
2hdy_A
403
154
28
2.79
0.00
12.511
0.967
T P
1mey_F
84
154
27
2.61
7.41
12.467
0.998
T P
1g2d_C
89
154
26
2.51
0.00
12.429
0.996
T P
2eoe_A
46
154
24
2.18
8.33
12.403
1.055
T P
1c0n_A
404
154
26
2.66
11.54
12.400
0.943
T P
2em2_A
46
154
28
2.45
7.14
12.369
1.098
T P
1a1i_A
85
154
25
2.40
4.00
12.323
1.000
T P
2eq1_A
46
154
25
2.74
4.00
12.318
0.880
T P
1elu_A
382
154
26
2.53
19.23
12.317
0.988
T P
3cai_A
396
154
27
2.80
7.41
11.933
0.930
T P
2en0_A
42
154
28
2.75
10.71
11.875
0.981
T P
2enf_A
46
154
26
2.62
0.00
11.864
0.956
T P
2en4_A
46
154
24
2.43
8.33
11.845
0.950
T P
2eol_A
42
154
26
2.48
11.54
11.611
1.009
T P
2yu8_A
46
154
24
2.55
8.33
11.066
0.904
T P
2eme_A
46
154
24
2.59
4.17
11.063
0.892
T P
1x6e_A
72
154
25
2.70
4.00
10.916
0.894
T P
2epz_A
46
154
25
2.73
4.00
10.906
0.883
T P
1v65_A
64
154
25
2.54
4.00
10.845
0.946
T P
2yti_A
46
154
25
2.74
0.00
10.580
0.881
T P
2yrh_A
44
154
23
2.78
0.00
10.444
0.799
T P
2eow_A
46
154
21
2.43
9.52
10.422
0.830
T P
2emw_A
44
154
23
2.76
0.00
10.253
0.804
T P
2eqw_A
42
154
24
2.54
12.50
10.134
0.910
T P
2eq3_A
46
154
23
2.83
4.35
10.096
0.785
T P
2emv_A
44
154
23
2.57
8.70
10.032
0.863
T P
2ep3_A
46
154
21
2.76
0.00
9.697
0.734
T P
2cot_A
77
154
23
2.77
0.00
9.328
0.801
T P
2em1_A
44
154
22
2.94
4.55
9.095
0.723
T P
2emp_A
46
154
18
2.69
5.56
8.949
0.646
T P

NS : Total number of residues in Structure (rotated structure)
NT : Total number of residues in TARGET (frame of reference)
N : Total number of residues superimposed under 4.0 Angstrom distance cutoff
RMSD : RMS deviation calculated on all N residues superimposed under 4.0 Angstrom distance cutoff
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
LGA_S : Structure similarity score calculated by internal LGA procedure (see LGA paper for details)
LGA_Q : Score (how tight is the superposition) calculated by the formula: Q = 0.1*N/(0.1+RMSD)
PLOTS : T - Flat text file (output from LGA program, rotated structure)
PLOTS : P - Plot of superimposed structures (3D plot colored as bars)

Citing LGA:
Zemla A., "LGA - a Method for Finding 3D Similarities in Protein Structures", Nucleic Acids Research, 2003, Vol. 31, No. 13, pp. 3370-3374. [MEDLINE]